JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRPK3_chrX_153776041_153790730	0/0	c0016	1703	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0017	1698	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0018	1705	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0019	1704	1	0	1	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0020	1705	1	0	1	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0021	1704	1	1	0	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0022	1705	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0023	1704	1	1	0	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0024	1704	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0025	1704	1	0	1	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0026	1704	1	0	1	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0027	1704	1	0	1	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0028	1707	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0029	1706	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0030	1695	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0031	1704	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPRA_chr11_126257938_126273895	1/1	c0001	1917	328	83	69	119	16	39	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	c0002	1917	53	1	0	51	0	1	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	c0003	1917	5	5	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	c0004	1917	4	0	0	4	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	c0005	1917	1	1	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	c0006	1917	1	0	1	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	c0007	1917	1	1	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	c0008	1917	1	1	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	c0009	1917	1	0	0	1	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	c0010	1917	1	0	0	1	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRB_chr3_133800815_133826492	1/1	c0001	816	334	79	54	142	17	40	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	c0002	816	95	9	25	51	1	9	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	c0003	816	7	6	1	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	c0004	816	7	0	0	7	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	c0005	816	1	0	0	0	0	1	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	c0006	816	1	1	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	c0007	816	1	1	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPX2_chrX_100639199_100680788	1/1	c0001	1398	314	78	57	134	11	32	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	c0002	1398	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	c0003	1398	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	c0004	1398	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	c0005	1399	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX_chrX_38144339_38225871	1/0	c0001	1395	185	25	30	94	7	28	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0002	1392	34	16	11	0	2	5	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0003	1395	19	19	0	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/1	c0004	1395	6	1	3	0	1	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0005	1395	4	0	3	1	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0006	1392	1	1	0	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0007	1392	1	1	0	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0008	1395	1	1	0	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0009	1395	1	0	0	0	1	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0010	1395	1	0	0	0	0	1	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0011	1395	1	0	0	1	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0012	1395	1	0	0	1	0	0	copy fasta	SRPX	chrX	38144339	38225871