JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRPX_chrX_38144339_38225871	0/0	c0013	1395	1	0	1	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	c0014	1395	1	0	1	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRRD_chr22_26478877_26499658	0/1	c0001	999	338	59	54	172	15	37	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	1/0	c0002	1020	64	31	11	18	0	3	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	c0003	999	34	0	4	27	1	2	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	c0004	1020	5	0	5	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	c0005	999	3	1	2	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	c0006	999	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	c0007	1041	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	c0008	999	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	c0009	998	1	0	0	1	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRM1_chr1_24638302_24678281	1/1	c0001	2715	324	87	63	124	11	37	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	c0002	2715	17	6	3	5	2	1	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	c0003	2715	4	2	2	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	c0004	2715	1	0	0	1	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	c0005	2715	1	0	1	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	c0006	2715	1	0	1	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	c0007	2715	1	0	0	1	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	c0008	2715	1	0	0	1	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	c0009	2715	1	0	0	0	1	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	c0010	2715	1	1	0	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM2_chr16_2747638_2776412	0/1	c0001	8259	107	0	38	44	9	15	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	1/0	c0002	8259	62	0	0	56	1	4	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0003	8259	58	15	5	34	1	3	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0004	8259	52	31	6	11	4	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0005	8259	13	11	2	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0006	8259	8	8	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0007	8259	7	1	4	0	0	2	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0008	8259	5	0	0	5	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0009	8259	4	2	2	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0010	8259	4	0	0	4	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0011	8259	3	0	2	0	1	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0012	8259	3	0	0	3	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0013	8259	3	0	0	0	0	3	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0014	8259	2	2	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0015	8259	2	0	0	2	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0016	8259	2	2	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0017	8259	2	1	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0018	8259	2	0	0	2	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0019	8259	2	0	0	2	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0020	8259	2	0	1	0	1	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0021	8259	2	0	1	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0022	8259	2	0	0	2	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0023	8259	2	2	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0024	8259	2	2	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0025	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0026	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0027	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0028	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0029	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412