JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRRM2_chr16_2747638_2776412	0/0	c0030	8259	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0031	8259	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0032	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0033	8259	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0034	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0035	8259	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0036	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0037	8259	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0038	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0039	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0040	8259	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0041	8259	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0042	8259	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0043	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0044	8259	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0045	8259	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0046	8259	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0047	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0048	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0049	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0050	8259	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0051	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0052	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0053	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0054	8259	1	0	0	0	1	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0055	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0056	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0057	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0058	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0059	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0060	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0061	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0062	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0063	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0064	8259	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0065	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0066	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0067	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0068	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0069	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0070	8259	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0071	8259	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0072	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0073	8259	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0074	8259	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	c0075	8259	1	0	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM3_chr7_76196896_76292287	1/1	c0001	1962	239	53	46	93	13	32	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0002	1962	42	10	6	23	0	3	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0003	1962	7	7	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0004	1962	4	1	0	0	1	2	copy fasta	SRRM3	chr7	76196896	76292287