JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AVIL_chr12_57792380_57823734	0/0	c0008	2460	1	0	0	0	1	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	1/0	c0009	2460	1	0	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0010	2460	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0011	2460	1	0	1	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0012	2460	1	1	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0013	2460	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0014	2460	1	1	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0015	2449	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0016	2460	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0017	2460	1	1	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0018	2460	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0019	2460	1	0	1	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVL9_chr7_32490489_32593726	0/1	c0001	1947	174	30	36	82	5	20	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	1/0	c0002	1947	59	15	7	29	1	6	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0003	1947	49	10	7	18	3	11	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0004	1947	16	8	6	1	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0005	1947	9	7	2	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0006	1947	6	6	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0007	1947	5	4	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0008	1947	5	5	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0009	1947	3	3	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0010	1947	2	0	1	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0011	1947	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	c0012	1947	1	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVPI1_chr10_97672424_97692241	0/0	c0001	444	217	49	38	98	8	24	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	1/1	c0002	444	180	26	38	83	9	22	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	c0003	444	24	0	6	17	1	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	c0004	444	13	13	0	0	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	c0005	444	9	9	0	0	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	c0006	444	2	0	0	2	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPI1_chr10_97672424_97692241	0/0	c0007	444	1	1	0	0	0	0	copy fasta	AVPI1	chr10	97672424	97692241
AVPR1A_chr12_63137759_63156201	0/1	c0001	1257	251	61	44	105	7	33	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	1/0	c0002	1257	159	18	25	91	11	13	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0003	1257	16	16	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0004	1257	10	0	0	10	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0005	1257	3	0	0	3	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0006	1257	2	0	2	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0007	1257	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0008	1257	1	0	0	1	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0009	1257	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0010	1257	1	0	0	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0011	1257	1	0	1	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0012	1257	1	0	0	0	0	1	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1A_chr12_63137759_63156201	0/0	c0013	1257	1	1	0	0	0	0	copy fasta	AVPR1A	chr12	63137759	63156201
AVPR1B_chr1_206101936_206122388	1/0	c0001	1275	279	38	50	149	14	27	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0002	1275	45	13	2	23	0	7	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0003	1275	21	20	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0004	1275	19	19	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0005	1275	9	4	1	1	0	3	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0006	1275	9	1	5	0	2	1	copy fasta	AVPR1B	chr1	206101936	206122388