JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRRM3_chr7_76196896_76292287	0/0	c0005	1962	4	4	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0006	1962	3	0	0	2	0	1	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0007	1962	3	2	1	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0008	1962	3	0	0	3	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0009	1962	3	0	3	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0010	1962	2	2	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0011	1962	2	2	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0012	1962	2	2	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0013	1962	2	2	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0014	1962	2	0	2	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0015	1962	1	0	0	1	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0016	1962	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0017	1962	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0018	1962	1	0	0	0	0	1	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0019	1962	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	c0020	1962	1	0	0	0	0	1	copy fasta	SRRM3	chr7	76196896	76292287
SRRM4_chr12_118976541_119168051	1/1	c0001	1836	205	35	29	102	5	32	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0002	1836	54	8	11	23	8	4	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0003	1836	27	9	8	8	0	2	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0004	1836	7	7	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0005	1836	6	0	0	6	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0006	1836	5	4	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0007	1836	3	1	1	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0008	1836	2	0	2	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0009	1836	2	0	0	2	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0010	1836	2	0	1	0	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0011	1836	2	2	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0012	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0013	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0014	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0015	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0016	1836	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0017	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0018	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0019	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0020	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0021	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0022	1836	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0023	1836	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	c0024	1836	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM5_chr19_43607088_43619498	1/0	c0001	2148	198	35	37	96	5	24	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0002	2148	87	5	19	54	3	6	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0003	2148	75	19	14	25	6	11	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0004	2148	7	6	1	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0005	2148	7	7	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0006	2148	6	4	2	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0007	2148	5	5	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/1	c0008	2148	5	0	2	0	0	2	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0009	2148	3	3	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0010	2148	3	0	0	3	0	0	copy fasta	SRRM5	chr19	43607088	43619498