JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRRM5_chr19_43607088_43619498	0/0	c0011	2148	2	0	0	2	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0012	2148	2	0	1	0	0	1	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0013	2133	1	0	1	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0014	2148	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0015	2112	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0016	2148	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0017	2148	1	0	0	0	0	1	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0018	2148	1	0	0	0	0	1	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0019	2148	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0020	2148	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0021	2148	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0022	2148	1	0	1	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0023	2148	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0024	2112	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0025	2112	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0026	2148	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0027	2148	1	0	0	1	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	c0028	2148	1	1	0	0	0	0	copy fasta	SRRM5	chr19	43607088	43619498
SRRT_chr7_100870103_100893664	0/1	c0001	2631	232	15	42	137	7	30	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	1/0	c0002	2631	152	53	24	48	10	16	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	c0003	2631	24	20	2	0	1	1	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	c0004	2631	4	4	0	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	c0005	2631	2	0	2	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	c0006	2631	1	1	0	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	c0007	2631	1	0	0	1	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	c0008	2631	1	1	0	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	c0009	2631	1	1	0	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	c0010	2631	1	1	0	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	c0011	2631	1	0	0	0	0	1	copy fasta	SRRT	chr7	100870103	100893664
SRR_chr17_2298950_2330260	1/1	c0001	1023	368	92	70	148	12	44	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	c0002	1023	1	0	0	1	0	0	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	c0003	1041	1	0	0	1	0	0	copy fasta	SRR	chr17	2298950	2330260
SRSF10_chr1_23959347_23985327	1/1	c0001	789	373	73	70	176	14	38	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	c0002	789	10	10	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	c0003	777	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF11_chr1_70216380_70258052	1/1	c0001	1455	334	62	63	153	12	42	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	c0002	1455	1	0	0	1	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	c0003	1455	1	1	0	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	c0004	1455	1	0	1	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	c0005	1455	1	1	0	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF12_chr6_89090959_89123071	1/1	c0001	786	375	96	84	142	13	38	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	c0002	786	1	0	0	0	1	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF1_chr17_57995919_58012246	1/1	c0001	747	341	92	62	129	18	38	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	c0002	747	1	0	0	1	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF2_chr17_76729115_76742331	0/0	c0001	666	306	51	56	151	14	34	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/1	c0002	666	76	35	7	25	2	6	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	c0003	666	7	7	0	0	0	0	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	1/0	c0004	666	5	3	1	0	0	0	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	c0005	666	4	0	0	4	0	0	copy fasta	SRSF2	chr17	76729115	76742331
SRSF3_chr6_36589362_36610600	1/1	c0001	495	377	90	74	166	8	37	copy fasta	SRSF3	chr6	36589362	36610600