JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRSF3_chr6_36589362_36610600	0/0	c0002	495	2	2	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	c0003	495	2	0	0	2	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	c0004	495	1	0	0	0	0	1	copy fasta	SRSF3	chr6	36589362	36610600
SRSF4_chr1_29142743_29186900	0/0	c0001	1485	140	47	45	23	6	19	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	1/1	c0002	1485	125	24	21	71	0	7	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	c0003	1485	87	12	8	55	2	10	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	c0004	1485	8	0	0	8	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	c0005	1485	2	1	1	0	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	c0006	1485	2	0	2	0	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	c0007	1485	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	c0008	1485	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	c0009	1485	1	0	1	0	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	c0010	1485	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF5_chr14_69762142_69777005	1/1	c0001	819	376	94	74	150	14	42	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	c0002	819	1	0	0	1	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	c0003	819	1	0	0	1	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF6_chr20_43452896_43469243	0/1	c0001	1035	335	78	67	149	14	26	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	1/0	c0002	1035	93	2	7	58	3	22	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	c0003	1035	13	11	2	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	c0004	1035	9	0	0	9	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	c0005	1035	6	0	4	0	1	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	c0006	1035	5	0	0	5	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	c0007	1035	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	c0008	1035	1	0	0	0	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	c0009	1035	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF7_chr2_38738599_38756361	1/1	c0001	717	423	88	76	193	18	46	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	c0002	717	2	2	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	c0003	717	1	0	0	1	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF8_chr11_95061919_95076225	1/1	c0001	849	379	84	74	162	14	43	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0002	849	9	9	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0003	849	4	0	4	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0004	849	2	2	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0005	849	2	0	0	2	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0006	849	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0007	849	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0008	849	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0009	849	1	0	0	0	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0010	849	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	c0011	849	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF9_chr12_120456672_120474748	1/1	c0001	666	400	92	63	191	14	38	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	c0002	666	31	0	13	14	2	2	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	c0003	666	10	0	2	1	2	5	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	c0004	666	2	0	2	0	0	0	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	c0005	666	1	0	0	0	0	1	copy fasta	SRSF9	chr12	120456672	120474748
SRXN1_chr20_641615_658200	1/1	c0001	414	375	75	79	166	16	37	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	c0002	414	35	12	3	11	0	9	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	c0003	414	4	0	0	4	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	c0004	414	4	4	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	c0005	414	1	0	0	1	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	c0006	414	1	0	0	0	0	1	copy fasta	SRXN1	chr20	641615	658200