JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSBP4_chr19_18414398_18439562	0/0	c0005	1158	2	2	0	0	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	c0006	1158	2	2	0	0	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	c0007	1158	2	2	0	0	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	c0008	1158	1	0	0	1	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	c0009	1158	1	0	0	0	1	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	c0010	1158	1	0	0	0	1	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	c0011	1158	1	0	0	1	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSB_chr2_169793871_169817064	1/1	c0001	1227	412	92	73	190	14	41	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	c0002	1227	7	0	0	3	0	4	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	c0003	1227	2	1	1	0	0	0	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	c0004	1227	2	2	0	0	0	0	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	c0005	1227	1	0	0	0	0	1	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	c0006	1227	1	1	0	0	0	0	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	c0007	1227	1	0	0	1	0	0	copy fasta	SSB	chr2	169793871	169817064
SSC4D_chr7_76384337_76414697	1/0	c0001	1728	154	32	30	60	9	22	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0002	1728	66	3	14	38	1	10	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0003	1728	48	14	7	25	1	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/1	c0004	1728	29	10	6	1	4	7	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0005	1728	29	0	5	22	1	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0006	1728	25	23	2	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0007	1728	8	5	3	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0008	1728	6	0	0	6	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0009	1728	5	0	0	5	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0010	1728	3	3	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0011	1728	2	2	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0012	1728	2	2	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0013	1728	1	1	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0014	1728	1	0	0	1	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0015	1728	1	0	1	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0016	1728	1	1	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0017	1728	1	0	0	0	0	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0018	1728	1	0	0	1	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0019	1728	1	0	0	1	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0020	1728	1	0	0	0	0	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0021	1728	1	1	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0022	1728	1	0	0	0	0	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	c0023	1728	1	1	0	0	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC5D_chr19_55483436_55524099	0/0	c0001	4725	48	2	4	40	0	2	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0002	4722	44	8	17	4	3	12	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0003	4722	27	11	6	7	1	2	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0004	4818	24	0	1	23	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0005	4638	20	1	13	6	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0006	4725	16	1	2	3	0	10	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0007	4722	15	2	3	7	2	1	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	1/0	c0008	4722	13	0	0	12	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0009	4722	13	0	0	13	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0010	4725	12	9	1	2	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0011	4722	9	1	5	1	1	1	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0012	4719	7	7	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0013	4725	6	0	0	6	0	0	copy fasta	SSC5D	chr19	55483436	55524099