JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSC5D_chr19_55483436_55524099	0/0	c0064	4722	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0065	4665	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0066	4713	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0067	4725	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0068	4638	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0069	4725	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0070	4638	1	0	1	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0071	4725	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0072	4713	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0073	4638	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0074	4722	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0075	4722	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0076	4722	1	0	1	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0077	4719	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0078	4722	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0079	4638	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0080	4713	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0081	4893	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0082	4722	1	0	0	0	0	1	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0083	4713	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0084	4725	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0085	4722	1	0	0	0	0	1	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0086	4725	1	0	1	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0087	4722	1	0	0	0	1	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0088	4725	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0089	4818	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0090	4722	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0091	4713	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0092	4722	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0093	4722	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0094	4722	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0095	4722	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0096	4818	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0097	4722	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0098	4719	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0099	4722	1	1	0	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0100	4722	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0101	4725	1	0	1	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0102	4722	1	0	0	0	1	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0103	4722	1	0	1	0	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0104	4725	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0105	4638	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0106	4722	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0107	4722	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	c0108	4722	1	0	0	1	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSH1_chr12_108773191_108862583	0/1	c0001	3150	188	51	38	84	4	10	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	1/0	c0002	3150	104	15	26	32	5	25	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0003	3150	6	6	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0004	3150	4	4	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0005	3150	4	0	0	4	0	0	copy fasta	SSH1	chr12	108773191	108862583