JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSH1_chr12_108773191_108862583	0/0	c0006	3150	2	1	1	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0007	3150	2	0	0	0	0	2	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0008	3150	2	2	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0009	3150	2	2	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0010	3150	2	0	0	2	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0011	3150	2	2	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0012	3150	1	0	0	0	1	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0013	3150	1	0	0	0	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0014	3150	1	0	0	0	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0015	3150	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0016	3150	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0017	3150	1	0	0	0	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0018	3150	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0019	3150	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0020	3150	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0021	3150	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0022	3150	1	0	1	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0023	3150	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0024	3150	1	0	0	0	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	c0025	3150	1	0	0	0	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH2_chr17_29620938_29935228	1/0	c0001	4353	157	54	29	42	4	27	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/1	c0002	4353	44	7	17	5	6	8	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0003	4353	6	5	1	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0004	4353	4	0	2	0	2	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0005	4353	3	0	3	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0006	4353	2	2	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0007	4353	2	2	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0008	4353	2	2	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0009	4353	2	0	0	1	0	1	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0010	4353	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0011	4353	1	0	0	1	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0012	4353	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0013	4353	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0014	4353	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0015	4353	1	0	0	1	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0016	4353	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0017	4353	1	0	1	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0018	4353	1	0	1	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	c0019	4353	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH3_chr11_67298530_67317592	1/1	c0001	1980	236	59	37	93	13	32	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0002	1980	52	13	3	34	1	1	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0003	1980	26	8	16	2	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0004	1980	5	1	4	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0005	1980	4	4	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0006	1980	1	0	1	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0007	1980	1	0	0	0	0	1	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0008	1980	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0009	1980	1	0	1	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0010	1980	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0011	1980	1	0	0	1	0	0	copy fasta	SSH3	chr11	67298530	67317592