JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSH3_chr11_67298530_67317592	0/0	c0012	1980	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0013	1980	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	c0014	1980	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSMEM1_chr7_130202860_130221844	1/1	c0001	735	308	60	72	128	10	36	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	c0002	735	51	29	11	0	4	7	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	c0003	735	1	1	0	0	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	c0004	735	1	1	0	0	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	c0005	735	1	0	0	0	0	1	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	c0006	735	1	0	0	1	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	c0007	735	1	0	1	0	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	c0008	735	1	1	0	0	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	c0009	735	1	0	0	1	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSNA1_chr9_137183676_137195366	1/1	c0001	360	387	94	76	161	12	42	copy fasta	SSNA1	chr9	137183676	137195366
SSNA1_chr9_137183676_137195366	0/0	c0002	360	1	0	0	1	0	0	copy fasta	SSNA1	chr9	137183676	137195366
SSPN_chr12_26190573_26239777	1/1	c0001	732	302	53	56	143	12	36	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	c0002	732	41	13	7	15	2	4	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	c0003	732	28	24	4	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	c0004	732	5	0	0	5	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	c0005	732	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	c0006	732	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	c0007	732	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	c0008	732	1	0	1	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	c0009	732	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSR1_chr6_7276143_7318199	1/1	c0001	861	302	40	62	156	11	31	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	c0002	861	119	45	12	48	4	10	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	c0003	861	7	2	4	0	1	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	c0004	861	2	0	0	2	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	c0005	861	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	c0006	861	1	0	0	0	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	c0007	861	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	c0008	861	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR2_chr1_156004048_156025951	1/1	c0001	552	354	90	66	134	16	46	copy fasta	SSR2	chr1	156004048	156025951
SSR2_chr1_156004048_156025951	0/0	c0002	552	2	2	0	0	0	0	copy fasta	SSR2	chr1	156004048	156025951
SSR3_chr3_156534553_156560117	1/1	c0001	558	297	81	50	122	10	32	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	c0002	558	74	5	8	45	6	10	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	c0003	558	25	2	2	19	0	2	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	c0004	558	4	4	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR4_chrX_153789668_153803499	1/1	c0001	522	308	80	53	132	9	32	copy fasta	SSR4	chrX	153789668	153803499
SSR4_chrX_153789668_153803499	0/0	c0002	522	1	0	1	0	0	0	copy fasta	SSR4	chrX	153789668	153803499
SSRP1_chr11_57320988_57340892	1/0	c0001	2130	296	57	52	132	14	40	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	c0002	2130	43	27	8	2	3	3	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/1	c0003	2130	12	2	7	0	1	1	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	c0004	2130	6	6	0	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	c0005	2130	4	4	0	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	c0006	2130	2	0	2	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	c0007	2130	2	0	2	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	c0008	2130	1	0	0	1	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	c0009	2130	1	1	0	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	c0010	2130	1	0	1	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	c0011	2130	1	1	0	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892