JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSRP1_chr11_57320988_57340892	0/0	c0012	2130	1	0	0	1	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSTR1_chr14_38202904_38218067	1/0	c0001	1176	312	66	48	169	10	18	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	c0002	1200	68	17	20	24	2	5	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	c0003	1176	66	11	14	14	4	23	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	c0004	1169	5	1	0	4	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	c0005	1176	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	c0006	1176	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	c0007	1169	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/1	c0008	1176	1	0	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	c0009	1176	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR2_chr17_73160010_73181633	1/1	c0001	1110	452	93	83	210	18	46	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	c0002	1110	1	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	c0003	1110	1	0	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR3_chr22_37199237_37217477	1/1	c0001	1257	222	42	43	89	15	31	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0002	1257	116	11	20	76	1	8	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0003	1257	23	19	3	0	1	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0004	1257	18	0	11	1	1	5	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0005	1257	11	11	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0006	1257	3	0	0	3	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0007	1257	3	3	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0008	1257	2	2	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0009	1257	2	2	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0010	1257	2	0	0	2	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0011	1257	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0012	1257	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0013	1257	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0014	1257	1	0	1	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0015	1257	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0016	1257	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0017	1257	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0018	1257	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0019	1257	1	0	0	0	0	1	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0020	1257	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0021	1257	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0022	1257	1	0	0	0	0	1	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0023	1257	1	1	0	0	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR3_chr22_37199237_37217477	0/0	c0024	1257	1	0	0	1	0	0	copy fasta	SSTR3	chr22	37199237	37217477
SSTR4_chr20_23030312_23044237	1/1	c0001	1167	200	46	42	87	9	14	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0002	1167	113	20	16	48	8	21	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0003	1167	90	10	13	60	0	7	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0004	1167	20	12	2	6	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0005	1167	3	3	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0006	1167	3	0	0	3	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0007	1167	2	0	0	2	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0008	1167	1	0	0	1	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0009	1167	1	0	0	1	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0010	1167	1	0	0	0	1	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0011	1167	1	1	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0012	1167	1	0	1	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR4_chr20_23030312_23044237	0/0	c0013	1167	1	1	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237