JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AVPR1B_chr1_206101936_206122388	0/1	c0007	1275	6	0	5	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0008	1275	2	0	2	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0009	1275	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0010	1275	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0011	1275	1	0	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0012	1275	1	1	0	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0013	1275	1	0	1	0	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR1B_chr1_206101936_206122388	0/0	c0014	1275	1	0	0	1	0	0	copy fasta	AVPR1B	chr1	206101936	206122388
AVPR2_chrX_153899673_153912166	0/0	c0001	1116	180	45	26	89	0	20	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	1/1	c0002	1116	86	5	21	42	8	8	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0003	1116	16	1	3	7	3	2	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0004	1116	9	6	1	2	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0005	1116	7	7	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0006	1116	7	6	1	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0007	1116	2	2	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0008	1116	2	0	1	0	0	1	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0009	1116	2	2	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0010	1116	2	2	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0011	1116	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0012	1119	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0013	1116	1	1	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0014	1116	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0015	1116	1	0	1	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0016	1116	1	0	0	0	0	1	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0017	1116	1	1	0	0	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0018	1128	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVPR2_chrX_153899673_153912166	0/0	c0019	1116	1	0	0	1	0	0	copy fasta	AVPR2	chrX	153899673	153912166
AVP_chr20_3077556_3089724	1/1	c0001	495	464	94	84	220	16	48	copy fasta	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	c0002	495	1	0	1	0	0	0	copy fasta	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	c0003	495	1	1	0	0	0	0	copy fasta	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	c0004	495	1	0	1	0	0	0	copy fasta	AVP	chr20	3077556	3089724
AVP_chr20_3077556_3089724	0/0	c0005	495	1	1	0	0	0	0	copy fasta	AVP	chr20	3077556	3089724
AWAT1_chrX_70229655_70245659	1/1	c0001	987	305	71	55	138	13	26	copy fasta	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	c0002	987	4	4	0	0	0	0	copy fasta	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	c0003	987	4	0	0	0	0	4	copy fasta	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	c0004	988	1	0	0	1	0	0	copy fasta	AWAT1	chrX	70229655	70245659
AWAT1_chrX_70229655_70245659	0/0	c0005	987	1	1	0	0	0	0	copy fasta	AWAT1	chrX	70229655	70245659
AWAT2_chrX_70035542_70054938	1/0	c0001	1002	331	77	59	150	12	32	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	c0002	1002	2	2	0	0	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	c0003	989	1	0	0	1	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	c0004	1002	1	1	0	0	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	c0005	1003	1	0	0	1	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/0	c0006	1002	1	0	0	1	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AWAT2_chrX_70035542_70054938	0/1	c0007	1002	1	0	0	0	0	0	copy fasta	AWAT2	chrX	70035542	70054938
AXDND1_chr1_179360971_179559735	0/0	c0001	3036	75	5	9	49	4	8	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0002	3039	72	9	8	44	4	7	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	1/0	c0003	3039	62	17	8	28	3	5	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/1	c0004	3039	42	17	11	8	2	3	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0005	3036	13	0	5	7	1	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0006	3039	11	7	2	2	0	0	copy fasta	AXDND1	chr1	179360971	179559735