JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSTR4_chr20_23030312_23044237	0/0	c0014	1167	1	1	0	0	0	0	copy fasta	SSTR4	chr20	23030312	23044237
SSTR5_chr16_1067747_1086454	0/1	c0001	1095	174	23	30	95	12	13	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0002	1095	71	23	21	9	4	14	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0003	1095	20	16	2	0	0	2	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	1/0	c0004	1095	18	4	0	6	1	6	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0005	1095	10	8	2	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0006	1095	9	0	0	9	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0007	1095	6	0	0	6	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0008	1095	6	0	5	0	0	1	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0009	1095	5	0	0	5	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0010	1095	5	5	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0011	1095	3	0	1	1	0	1	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0012	1095	2	0	0	2	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0013	1095	2	2	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0014	1095	2	2	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0015	1095	2	0	2	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0016	1095	2	2	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0017	1095	1	0	1	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0018	1095	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0019	1095	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0020	1095	1	0	0	0	1	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0021	1095	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0022	1095	1	0	0	0	0	1	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0023	1095	1	0	1	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0024	1095	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0025	1095	1	0	1	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0026	1095	1	0	0	1	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0027	1095	1	1	0	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0028	1095	1	0	1	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SSTR5_chr16_1067747_1086454	0/0	c0029	1095	1	0	1	0	0	0	copy fasta	SSTR5	chr16	1067747	1086454
SST_chr3_187663912_187675394	1/1	c0001	351	417	96	80	178	18	43	copy fasta	SST	chr3	187663912	187675394
SST_chr3_187663912_187675394	0/0	c0002	351	2	0	1	0	0	1	copy fasta	SST	chr3	187663912	187675394
SST_chr3_187663912_187675394	0/0	c0003	351	1	0	1	0	0	0	copy fasta	SST	chr3	187663912	187675394
SSU72L1_chr11_4333245_4344345	0/0	c0001	585	164	14	28	90	9	23	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	1/0	c0002	585	138	17	23	86	3	8	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0003	585	9	1	4	0	0	4	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0004	585	4	4	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0005	585	4	0	0	0	0	4	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0006	585	3	0	3	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0007	585	2	0	0	1	0	1	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0008	585	2	1	0	0	0	1	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0009	585	2	2	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0010	585	2	0	2	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0011	585	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0012	585	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0013	585	1	0	0	1	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0014	585	1	0	1	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0015	585	1	0	0	1	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0016	585	1	0	1	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0017	585	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345