JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSU72L1_chr11_4333245_4344345	0/0	c0018	585	1	0	0	0	0	1	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0019	585	1	0	0	1	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0020	585	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L1_chr11_4333245_4344345	0/0	c0021	585	1	1	0	0	0	0	copy fasta	SSU72L1	chr11	4333245	4344345
SSU72L2_chr11_4236641_4247706	1/0	c0001	585	132	27	25	72	2	5	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/1	c0002	585	95	2	32	37	7	16	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0003	585	47	4	4	30	3	6	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0004	585	46	14	5	20	0	7	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0005	585	8	7	1	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0006	585	8	8	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0007	585	5	0	0	5	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0008	585	4	1	2	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0009	585	3	3	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0010	585	2	1	1	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0011	585	2	2	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0012	585	2	2	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0013	585	2	2	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0014	585	2	2	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0015	585	1	0	0	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0016	585	1	0	0	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0017	585	1	0	0	0	0	1	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0018	585	1	1	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0019	585	1	0	0	1	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0020	585	1	1	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0021	585	1	1	0	0	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L2_chr11_4236641_4247706	0/0	c0022	585	1	0	0	1	0	0	copy fasta	SSU72L2	chr11	4236641	4247706
SSU72L3_chr11_4324790_4335864	1/0	c0001	585	137	24	27	70	4	11	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0002	585	113	12	27	57	4	13	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0003	585	40	0	6	23	1	10	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0004	585	11	0	0	11	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/1	c0005	585	11	0	7	0	1	2	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0006	585	7	0	0	7	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0007	585	5	1	0	3	0	1	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0008	585	5	0	2	0	2	1	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0009	585	3	3	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0010	585	2	2	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0011	585	2	1	1	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0012	585	1	1	0	0	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0013	585	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0014	585	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L3_chr11_4324790_4335864	0/0	c0015	585	1	0	0	1	0	0	copy fasta	SSU72L3	chr11	4324790	4335864
SSU72L4_chr11_4282084_4293185	0/0	c0000	0	1	0	1	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0001	585	233	50	42	105	7	29	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0002	585	42	5	15	14	3	5	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0003	585	20	20	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0004	585	7	0	5	0	2	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0005	585	6	6	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0006	585	2	1	1	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0007	585	2	0	0	2	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0008	585	1	0	1	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185