JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSU72L4_chr11_4282084_4293185	0/0	c0009	585	1	1	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0010	585	1	0	0	1	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0011	585	1	0	1	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L4_chr11_4282084_4293185	0/0	c0012	585	1	1	0	0	0	0	copy fasta	SSU72L4	chr11	4282084	4293185
SSU72L5_chr11_4228217_4239287	0/1	c0001	585	141	22	36	52	7	23	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0002	585	100	10	16	67	1	6	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0003	585	47	5	5	30	3	4	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0004	585	22	17	1	4	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0005	585	14	1	11	0	1	1	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0006	585	8	7	1	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0007	585	7	7	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0008	585	5	5	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	1/0	c0009	585	2	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0010	585	2	2	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0011	585	1	0	0	1	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0012	585	1	0	0	1	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0013	585	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0014	585	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0015	585	1	0	0	1	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L5_chr11_4228217_4239287	0/0	c0016	585	1	1	0	0	0	0	copy fasta	SSU72L5	chr11	4228217	4239287
SSU72L6_chr7_124471317_124482664	1/1	c0001	585	344	89	71	139	14	29	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	c0002	585	115	7	9	86	0	13	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	c0003	585	4	0	0	4	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	c0004	585	2	0	0	2	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72L6_chr7_124471317_124482664	0/0	c0005	585	1	0	0	1	0	0	copy fasta	SSU72L6	chr7	124471317	124482664
SSU72_chr1_1536673_1579863	0/0	c0001	585	297	73	53	132	7	32	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	1/1	c0002	585	86	10	23	27	7	17	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	c0003	585	1	1	0	0	0	0	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	c0004	585	1	0	0	0	0	1	copy fasta	SSU72	chr1	1536673	1579863
SSU72_chr1_1536673_1579863	0/0	c0005	585	1	0	0	1	0	0	copy fasta	SSU72	chr1	1536673	1579863
SSUH2_chr3_8614386_8649798	1/1	c0001	1128	432	90	76	197	18	49	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0002	1128	5	5	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0003	1128	4	0	0	4	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0004	1128	3	0	3	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0005	1128	2	2	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0006	1128	2	1	1	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0007	1128	1	1	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0008	1128	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0009	1128	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0010	1128	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0011	1128	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0012	1128	1	0	0	0	0	1	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0013	1128	1	1	0	0	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSUH2_chr3_8614386_8649798	0/0	c0014	1128	1	0	0	1	0	0	copy fasta	SSUH2	chr3	8614386	8649798
SSX1_chrX_48250392_48272444	0/0	c0001	567	167	21	27	94	6	19	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	1/1	c0002	567	150	41	23	63	7	14	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	c0003	567	13	13	0	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	c0004	567	2	0	2	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	c0005	567	2	0	2	0	0	0	copy fasta	SSX1	chrX	48250392	48272444
SSX1_chrX_48250392_48272444	0/0	c0006	567	2	0	2	0	0	0	copy fasta	SSX1	chrX	48250392	48272444