JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SSX7_chrX_52639061_52659900	0/0	c0007	567	1	1	0	0	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	c0008	566	1	0	0	1	0	0	copy fasta	SSX7	chrX	52639061	52659900
SSX7_chrX_52639061_52659900	0/0	c0009	567	1	0	1	0	0	0	copy fasta	SSX7	chrX	52639061	52659900
ST13_chr22_40819535_40861639	1/1	c0001	1110	327	81	49	143	15	37	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	c0002	1110	8	8	0	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	c0003	1110	7	0	3	0	1	3	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	c0004	1110	1	1	0	0	0	0	copy fasta	ST13	chr22	40819535	40861639
ST13_chr22_40819535_40861639	0/0	c0005	1110	1	0	0	1	0	0	copy fasta	ST13	chr22	40819535	40861639
ST14_chr11_130154782_130215362	0/0	c0001	2568	120	12	24	61	7	16	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/1	c0002	2568	41	7	6	20	3	4	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	1/0	c0003	2568	36	9	7	14	1	4	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0004	2568	16	14	2	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0005	2568	12	0	9	1	1	1	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0006	2568	11	11	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0007	2568	9	9	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0008	2568	7	6	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0009	2568	6	5	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0010	2568	3	1	0	2	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0011	2568	2	2	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0012	2568	2	0	1	0	0	1	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0013	2568	2	2	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0014	2568	2	2	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0015	2568	2	2	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0016	2568	2	1	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0017	2568	1	0	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0018	2568	1	0	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0019	2568	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0020	2568	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0021	2568	1	0	0	0	0	1	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0022	2568	1	0	0	0	0	1	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0023	2568	1	0	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0024	2568	1	0	0	1	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0025	2568	1	0	0	1	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0026	2568	1	0	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0027	2568	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0028	2568	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0029	2568	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0030	2568	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0031	2568	1	0	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0032	2568	1	0	1	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0033	2568	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0034	2568	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST14_chr11_130154782_130215362	0/0	c0035	2568	1	1	0	0	0	0	copy fasta	ST14	chr11	130154782	130215362
ST18_chr8_52105838_52414756	1/0	c0001	3144	85	58	10	12	0	4	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/1	c0002	3144	6	0	1	4	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	c0003	3144	3	3	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	c0004	3144	2	2	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	c0005	3144	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	c0006	3144	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	c0007	3144	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756