JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ST18_chr8_52105838_52414756	0/0	c0008	3144	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	c0009	3144	1	0	0	1	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	c0010	3144	1	0	0	1	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	c0011	3144	1	0	1	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST18_chr8_52105838_52414756	0/0	c0012	3144	1	1	0	0	0	0	copy fasta	ST18	chr8	52105838	52414756
ST3GAL1_chr8_133449848_133576887	0/0	c0001	1023	97	14	27	35	5	16	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	1/0	c0002	1023	91	25	3	55	0	7	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/1	c0003	1023	61	20	18	5	6	11	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0004	1023	50	12	6	17	5	10	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0005	1023	8	6	2	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0006	1023	6	6	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0007	1023	3	2	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0008	1023	3	3	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0009	1023	2	2	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0010	1023	2	0	0	2	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0011	1023	2	2	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0012	1023	2	1	1	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0013	1023	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0014	1023	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0015	1023	1	0	0	1	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0016	1023	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL1_chr8_133449848_133576887	0/0	c0017	1023	1	1	0	0	0	0	copy fasta	ST3GAL1	chr8	133449848	133576887
ST3GAL2_chr16_70370977_70444100	1/1	c0001	1053	309	71	62	132	10	32	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	c0002	1053	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	c0003	1053	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL2_chr16_70370977_70444100	0/0	c0004	1053	1	1	0	0	0	0	copy fasta	ST3GAL2	chr16	70370977	70444100
ST3GAL3_chr1_43702536_43936159	1/1	c0001	1128	274	74	40	126	8	24	copy fasta	ST3GAL3	chr1	43702536	43936159
ST3GAL4_chr11_126350686_126419638	1/0	c0001	1002	177	59	48	43	6	20	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/1	c0002	1002	100	30	17	40	8	4	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	c0003	1002	43	1	5	33	2	2	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	c0004	1002	1	0	1	0	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	c0005	1002	1	0	1	0	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	c0006	1002	1	0	0	1	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL4_chr11_126350686_126419638	0/0	c0007	1002	1	0	0	1	0	0	copy fasta	ST3GAL4	chr11	126350686	126419638
ST3GAL5_chr2_85832120_85893990	1/0	c0001	1257	281	83	39	121	11	26	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/1	c0002	1257	83	5	14	48	3	12	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	c0003	1257	2	1	0	1	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	c0004	1257	1	1	0	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	c0005	1257	1	0	1	0	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	c0006	1257	1	0	0	1	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL5_chr2_85832120_85893990	0/0	c0007	1257	1	0	0	1	0	0	copy fasta	ST3GAL5	chr2	85832120	85893990
ST3GAL6_chr3_98758340_98800852	1/1	c0001	996	357	80	70	147	15	43	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	c0002	996	8	0	0	4	1	3	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	c0003	996	5	5	0	0	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	c0004	996	1	1	0	0	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST3GAL6_chr3_98758340_98800852	0/0	c0005	996	1	0	0	1	0	0	copy fasta	ST3GAL6	chr3	98758340	98800852
ST6GAL1_chr3_186925526_187083553	1/1	c0001	1221	297	40	61	138	12	44	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0002	1221	27	20	7	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0003	1221	19	15	4	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0004	1221	8	7	1	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553