JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ST6GAL1_chr3_186925526_187083553	0/0	c0005	1221	2	2	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0006	1221	2	2	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0007	1221	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0008	1221	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0009	1221	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0010	1221	1	0	0	1	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0011	1221	1	0	1	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0012	1221	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL1_chr3_186925526_187083553	0/0	c0013	1221	1	1	0	0	0	0	copy fasta	ST6GAL1	chr3	186925526	187083553
ST6GAL2_chr2_106796600_106891167	1/1	c0001	1590	116	18	21	51	3	21	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0002	1590	65	2	6	50	1	6	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0003	1590	41	12	14	2	8	5	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0004	1590	29	9	6	10	1	3	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0005	1590	28	0	5	21	0	2	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0006	1590	11	8	0	0	0	3	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0007	1590	11	4	3	4	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0008	1590	11	0	0	9	0	2	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0009	1590	10	10	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0010	1590	8	0	0	8	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0011	1590	6	5	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0012	1590	5	5	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0013	1590	4	0	3	0	1	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0014	1592	2	0	1	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0015	1592	2	0	0	1	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0016	1590	2	2	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0017	1590	2	1	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0018	1590	2	2	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0019	1590	2	2	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0020	1590	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0021	1590	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0022	1592	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0023	1592	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0024	1590	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0025	1590	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0026	1590	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0027	1590	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0028	1592	1	0	0	1	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0029	1592	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0030	1590	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0031	1590	1	0	0	0	0	1	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0032	1590	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0033	1590	1	0	1	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GAL2_chr2_106796600_106891167	0/0	c0034	1590	1	1	0	0	0	0	copy fasta	ST6GAL2	chr2	106796600	106891167
ST6GALNAC1_chr17_76619763_76648757	1/1	c0001	1803	355	67	66	168	14	38	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	c0002	1803	13	8	1	0	1	3	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	c0003	1803	10	6	1	0	1	2	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	c0004	1800	6	0	0	6	0	0	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	c0005	1803	6	5	1	0	0	0	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	c0006	1803	4	4	0	0	0	0	copy fasta	ST6GALNAC1	chr17	76619763	76648757
ST6GALNAC1_chr17_76619763_76648757	0/0	c0007	1803	3	1	2	0	0	0	copy fasta	ST6GALNAC1	chr17	76619763	76648757