JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ST6GALNAC6_chr9_127880321_127904603	0/0	c0006	1002	1	0	1	0	0	0	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST6GALNAC6_chr9_127880321_127904603	0/0	c0007	1002	1	0	0	1	0	0	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST6GALNAC6_chr9_127880321_127904603	0/0	c0008	1002	1	0	0	0	0	1	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST6GALNAC6_chr9_127880321_127904603	0/0	c0009	1002	1	0	0	0	1	0	copy fasta	ST6GALNAC6	chr9	127880321	127904603
ST7L_chr1_112518514_112624141	1/0	c0001	1728	302	65	55	153	11	17	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0002	1728	37	8	10	11	5	3	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0003	1728	8	8	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0004	1728	3	3	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0005	1728	2	1	1	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0006	1728	1	1	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0007	1728	1	0	0	0	0	1	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0008	1728	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0009	1728	1	0	0	0	0	1	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0010	1728	1	1	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0011	1728	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/1	c0012	1728	1	0	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0013	1728	1	1	0	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0014	1728	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0015	1728	1	0	0	1	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0016	1728	1	0	1	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7L_chr1_112518514_112624141	0/0	c0017	1728	1	0	1	0	0	0	copy fasta	ST7L	chr1	112518514	112624141
ST7_chr7_116948501_117235176	1/1	c0001	1734	187	69	36	58	10	12	copy fasta	ST7	chr7	116948501	117235176
ST7_chr7_116948501_117235176	0/0	c0002	1734	1	1	0	0	0	0	copy fasta	ST7	chr7	116948501	117235176
ST8SIA1_chr12_22188391_22339707	0/1	c0001	1071	221	56	39	80	8	37	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	1/0	c0002	1071	57	22	7	22	2	3	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	c0003	1071	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	c0004	1071	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	c0005	1071	1	1	0	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA1_chr12_22188391_22339707	0/0	c0006	1071	1	0	1	0	0	0	copy fasta	ST8SIA1	chr12	22188391	22339707
ST8SIA2_chr15_92388881_92473728	1/1	c0001	1128	302	46	59	143	15	37	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	c0002	1128	61	40	10	4	1	6	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	c0003	1128	2	2	0	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	c0004	1128	2	1	1	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	c0005	1128	2	2	0	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	c0006	1128	1	1	0	0	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	c0007	1128	1	0	0	1	0	0	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA2_chr15_92388881_92473728	0/0	c0008	1128	1	0	0	0	0	1	copy fasta	ST8SIA2	chr15	92388881	92473728
ST8SIA3_chr18_57347557_57373931	1/1	c0001	1143	212	38	41	92	11	28	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	c0002	1143	168	27	27	93	5	16	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	c0003	1143	17	8	4	5	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	c0004	1143	16	15	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	c0005	1143	6	5	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	c0006	1143	3	2	1	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	c0007	1143	1	0	0	1	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA3_chr18_57347557_57373931	0/0	c0008	1143	1	1	0	0	0	0	copy fasta	ST8SIA3	chr18	57347557	57373931
ST8SIA4_chr5_100801933_100908282	1/1	c0001	1080	296	84	58	124	12	16	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	c0002	1080	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA4_chr5_100801933_100908282	0/0	c0003	1080	1	0	0	1	0	0	copy fasta	ST8SIA4	chr5	100801933	100908282
ST8SIA5_chr18_46662821_46762053	1/1	c0001	1131	353	82	63	151	14	41	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	c0002	1131	3	0	0	3	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053