JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ST8SIA5_chr18_46662821_46762053	0/0	c0003	1131	3	2	1	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	c0004	1131	2	2	0	0	0	0	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA5_chr18_46662821_46762053	0/0	c0005	1131	1	0	0	0	0	1	copy fasta	ST8SIA5	chr18	46662821	46762053
ST8SIA6_chr10_17310421_17459595	1/1	c0001	1197	271	62	56	104	11	36	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	c0002	1197	16	14	2	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	c0003	1197	3	0	2	0	1	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	c0004	1197	2	0	2	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	c0005	1197	2	0	1	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	c0006	1197	1	0	0	1	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
ST8SIA6_chr10_17310421_17459595	0/0	c0007	1197	1	0	1	0	0	0	copy fasta	ST8SIA6	chr10	17310421	17459595
STAB1_chr3_52490338_52529495	0/0	c0001	7713	78	17	10	31	7	13	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0002	7713	48	2	8	26	1	11	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/1	c0003	7713	33	4	12	8	3	5	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0004	7713	32	0	7	25	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0005	7713	15	15	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0006	7713	11	2	6	3	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0007	7713	10	9	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0008	7713	9	7	2	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0009	7713	9	0	0	9	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0010	7713	9	0	2	7	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0011	7713	8	0	0	8	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0012	7713	6	0	0	6	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0013	7713	5	1	2	0	1	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0014	7713	5	0	5	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0015	7713	4	4	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0016	7713	4	0	3	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0017	7713	3	1	1	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0018	7713	3	0	0	3	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0019	7713	3	3	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0020	7713	3	0	0	3	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0021	7713	2	0	1	0	1	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0022	7713	2	0	0	2	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0023	7713	2	1	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0024	7713	2	0	0	2	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0025	7713	2	2	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0026	7713	2	0	0	0	2	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0027	7713	2	2	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0028	7713	2	1	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0029	7713	2	2	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0030	7713	2	0	2	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0031	7713	2	1	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0032	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0033	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0034	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0035	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0036	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0037	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0038	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0039	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0040	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495