JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AXDND1_chr1_179360971_179559735	0/0	c0007	3039	10	10	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0008	3036	8	0	8	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0009	3039	7	7	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0010	3039	7	0	0	7	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0011	3039	5	0	0	5	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0012	3039	5	0	5	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0013	3039	4	4	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0014	3039	3	0	3	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0015	3039	3	3	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0016	3039	3	1	2	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0017	3039	3	3	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0018	3039	2	2	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0019	3036	2	0	0	1	0	1	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0020	3036	2	0	2	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0021	3039	2	0	0	2	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0022	3036	2	0	0	2	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0023	3036	2	2	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0024	3039	1	0	1	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0025	3039	1	0	0	1	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0026	3036	1	0	0	1	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0027	3036	1	0	0	0	0	1	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0028	3036	1	1	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0029	3039	1	0	1	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0030	3036	1	1	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0031	3036	1	0	1	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0032	3039	1	0	0	0	0	1	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0033	3039	1	0	0	1	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXDND1_chr1_179360971_179559735	0/0	c0034	3039	1	1	0	0	0	0	copy fasta	AXDND1	chr1	179360971	179559735
AXIN1_chr16_282440_357723	0/0	c0001	2589	136	22	24	48	10	32	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	1/1	c0002	2589	117	1	27	70	4	13	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0003	2589	56	29	10	13	2	2	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0004	2589	15	13	2	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0005	2589	8	6	2	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0006	2589	6	6	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0007	2589	5	5	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0008	2589	3	0	3	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0009	2589	3	2	1	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0010	2589	3	0	3	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0011	2589	2	0	2	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0012	2589	2	2	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0013	2589	2	0	0	2	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0014	2589	2	0	1	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0015	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0016	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0017	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0018	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0019	2589	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0020	2589	1	0	0	0	0	1	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0021	2589	1	0	0	0	0	1	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0022	2589	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723