JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STAB1_chr3_52490338_52529495	0/0	c0041	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0042	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0043	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0044	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0045	7713	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0046	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0047	7713	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0048	7713	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0049	7713	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0050	7713	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0051	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0052	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0053	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0054	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0055	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0056	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0057	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0058	7713	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0059	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0060	7713	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0061	7713	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0062	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0063	7713	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0064	7713	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	1/0	c0065	7713	1	0	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0066	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0067	7713	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0068	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0069	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0070	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0071	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0072	7713	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0073	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0074	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0075	7713	1	0	1	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0076	7713	1	0	0	1	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0077	7713	1	0	0	0	1	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0078	7713	1	1	0	0	0	0	copy fasta	STAB1	chr3	52490338	52529495
STAB1_chr3_52490338_52529495	0/0	c0079	7713	1	0	0	0	0	1	copy fasta	STAB1	chr3	52490338	52529495
STAB2_chr12_103582273_103771719	0/0	c0001	7656	14	1	0	6	4	3	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	1/0	c0002	7656	12	5	3	1	1	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0003	7656	10	0	3	1	0	6	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0004	7656	7	6	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0005	7656	7	0	1	6	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0006	7656	6	0	1	4	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0007	7656	4	0	0	2	0	2	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0008	7656	4	0	0	1	1	2	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0009	7656	4	0	0	1	2	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0010	7656	4	0	3	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/1	c0011	7656	4	0	0	2	0	1	copy fasta	STAB2	chr12	103582273	103771719