JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STAB2_chr12_103582273_103771719	0/0	c0112	7656	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0113	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0114	7656	1	0	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0115	7656	1	0	0	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0116	7656	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0117	7656	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0118	7656	1	0	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0119	7656	1	0	0	0	0	1	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0120	7656	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0121	7656	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0122	7656	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0123	7656	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0124	7656	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0125	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0126	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0127	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0128	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0129	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0130	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0131	7656	1	0	0	0	1	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0132	7656	1	0	0	1	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0133	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0134	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0135	7656	1	0	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0136	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0137	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0138	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0139	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0140	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0141	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0142	7656	1	1	0	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAB2_chr12_103582273_103771719	0/0	c0143	7656	1	0	1	0	0	0	copy fasta	STAB2	chr12	103582273	103771719
STAC2_chr17_39205541_39230945	1/1	c0001	1236	345	71	72	142	17	41	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	c0002	1236	14	13	1	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	c0003	1236	3	3	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	c0004	1236	1	0	0	0	1	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	c0005	1236	1	0	0	0	0	1	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	c0006	1236	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	c0007	1236	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	c0008	1236	1	0	1	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC2_chr17_39205541_39230945	0/0	c0009	1236	1	1	0	0	0	0	copy fasta	STAC2	chr17	39205541	39230945
STAC3_chr12_57238458_57256187	1/1	c0001	1095	400	89	70	177	18	44	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	c0002	1095	20	0	0	20	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	c0003	1095	6	6	0	0	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	c0004	1095	2	1	1	0	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	c0005	1095	1	0	1	0	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC3_chr12_57238458_57256187	0/0	c0006	1095	1	0	0	1	0	0	copy fasta	STAC3	chr12	57238458	57256187
STAC_chr3_36375504_36553007	1/1	c0001	1209	247	69	39	103	5	29	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	c0002	1209	49	4	10	26	2	7	copy fasta	STAC	chr3	36375504	36553007
STAC_chr3_36375504_36553007	0/0	c0003	1209	7	7	0	0	0	0	copy fasta	STAC	chr3	36375504	36553007