JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STAMBP_chr2_73823961_73872168	0/0	c0003	1275	6	0	1	4	0	1	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	c0004	1275	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	c0005	1275	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	c0006	1275	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	c0007	1275	1	1	0	0	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAMBP_chr2_73823961_73872168	0/0	c0008	1275	1	0	0	1	0	0	copy fasta	STAMBP	chr2	73823961	73872168
STAM_chr10_17639151_17721824	1/1	c0001	1623	330	81	69	140	13	25	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0002	1623	82	9	11	51	3	8	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0003	1623	4	0	0	4	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0004	1623	2	0	0	2	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0005	1623	1	0	0	0	0	1	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0006	1623	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0007	1623	1	0	0	0	0	1	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0008	1623	1	0	0	0	0	1	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0009	1623	1	1	0	0	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0010	1623	1	0	0	1	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0011	1623	1	0	0	1	0	0	copy fasta	STAM	chr10	17639151	17721824
STAM_chr10_17639151_17721824	0/0	c0012	1623	1	0	0	1	0	0	copy fasta	STAM	chr10	17639151	17721824
STAP1_chr4_67553727_67612337	1/1	c0001	888	253	46	52	125	5	23	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	c0002	888	93	27	15	38	5	8	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	c0003	888	30	12	11	0	4	3	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	c0004	888	2	0	0	2	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	c0005	888	1	0	0	0	0	1	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	c0006	888	1	0	0	1	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	c0007	888	1	0	0	0	0	1	copy fasta	STAP1	chr4	67553727	67612337
STAP1_chr4_67553727_67612337	0/0	c0008	888	1	1	0	0	0	0	copy fasta	STAP1	chr4	67553727	67612337
STAP2_chr19_4319043_4343827	0/1	c0001	1212	200	51	35	84	7	22	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	1/0	c0002	1212	118	24	26	48	6	13	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	c0003	1212	56	20	14	13	1	8	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	c0004	1212	5	0	1	3	0	1	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	c0005	1212	3	0	0	3	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	c0006	1212	1	0	0	1	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	c0007	1212	1	1	0	0	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	c0008	1212	1	0	1	0	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	c0009	1212	1	0	1	0	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	c0010	1212	1	0	0	1	0	0	copy fasta	STAP2	chr19	4319043	4343827
STAP2_chr19_4319043_4343827	0/0	c0011	1212	1	0	0	1	0	0	copy fasta	STAP2	chr19	4319043	4343827
STARD10_chr11_72749729_72799047	1/1	c0001	876	365	88	72	152	14	37	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	c0002	876	9	9	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	c0003	876	1	0	0	0	0	1	copy fasta	STARD10	chr11	72749729	72799047
STARD10_chr11_72749729_72799047	0/0	c0004	876	1	1	0	0	0	0	copy fasta	STARD10	chr11	72749729	72799047
STARD13_chr13_33098137_33290755	1/0	c0001	3342	76	19	14	34	1	7	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/1	c0002	3342	65	11	13	27	4	9	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0003	3342	64	2	20	31	1	10	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0004	3342	26	14	4	0	1	7	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0005	3342	12	11	0	0	0	1	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0006	3342	9	0	0	9	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0007	3342	7	0	2	5	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0008	3342	5	5	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0009	3342	5	1	1	0	1	2	copy fasta	STARD13	chr13	33098137	33290755