JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STARD13_chr13_33098137_33290755	0/0	c0010	3342	4	3	1	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0011	3342	4	4	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0012	3342	4	4	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0013	3342	3	3	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0014	3342	2	1	0	0	0	1	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0015	3342	2	2	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0016	3342	2	0	0	2	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0017	3342	1	0	1	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0018	3342	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0019	3342	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0020	3342	1	0	0	1	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0021	3342	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0022	3342	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0023	3342	1	0	0	1	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0024	3342	1	0	1	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0025	3342	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0026	3342	1	0	1	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0027	3342	1	1	0	0	0	0	copy fasta	STARD13	chr13	33098137	33290755
STARD13_chr13_33098137_33290755	0/0	c0028	3342	1	0	0	0	0	1	copy fasta	STARD13	chr13	33098137	33290755
STARD3NL_chr7_38173245_38235669	1/1	c0001	705	401	86	72	186	14	41	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	c0002	705	2	2	0	0	0	0	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3NL_chr7_38173245_38235669	0/0	c0003	705	1	0	0	0	0	1	copy fasta	STARD3NL	chr7	38173245	38235669
STARD3_chr17_39632144_39669201	1/0	c0001	1338	164	57	27	59	6	14	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/1	c0002	1338	124	16	26	53	9	19	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0003	1338	9	6	2	0	1	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0004	1338	5	0	0	5	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0005	1338	4	4	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0006	1338	2	2	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0007	1338	2	0	0	2	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0008	1338	2	0	0	2	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0009	1338	1	0	0	0	0	1	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0010	1338	1	0	0	1	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0011	1338	1	0	1	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD3_chr17_39632144_39669201	0/0	c0012	1338	1	1	0	0	0	0	copy fasta	STARD3	chr17	39632144	39669201
STARD4_chr5_111491033_111517535	1/1	c0001	618	428	97	71	198	16	44	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	c0002	618	2	0	2	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	c0003	618	1	0	1	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD4_chr5_111491033_111517535	0/0	c0004	618	1	1	0	0	0	0	copy fasta	STARD4	chr5	111491033	111517535
STARD5_chr15_81304053_81329141	1/1	c0001	642	436	93	70	213	14	44	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	c0002	642	5	0	0	5	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	c0003	642	4	4	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	c0004	642	2	1	1	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	c0005	642	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	c0006	642	1	0	1	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	c0007	642	1	1	0	0	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	c0008	642	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD5_chr15_81304053_81329141	0/0	c0009	642	1	0	0	1	0	0	copy fasta	STARD5	chr15	81304053	81329141
STARD6_chr18_54319492_54362858	1/1	c0001	663	273	69	57	115	4	26	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	c0002	663	46	14	11	6	6	9	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	c0003	663	23	8	4	2	4	5	copy fasta	STARD6	chr18	54319492	54362858