JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STARD6_chr18_54319492_54362858	0/0	c0004	663	5	0	0	5	0	0	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	c0005	663	2	0	2	0	0	0	copy fasta	STARD6	chr18	54319492	54362858
STARD6_chr18_54319492_54362858	0/0	c0006	663	1	1	0	0	0	0	copy fasta	STARD6	chr18	54319492	54362858
STARD7_chr2_96179859_96213827	1/1	c0001	1113	303	73	54	144	6	24	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0002	1113	31	0	5	15	0	11	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0003	1113	12	3	1	7	0	1	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0004	1113	2	1	1	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0005	1113	2	0	2	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0006	1113	2	2	0	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0007	1113	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0008	1113	1	0	0	1	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0009	1163	1	0	1	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0010	1113	1	0	0	0	0	1	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0011	1113	1	1	0	0	0	0	copy fasta	STARD7	chr2	96179859	96213827
STARD7_chr2_96179859_96213827	0/0	c0012	1113	1	0	0	0	0	1	copy fasta	STARD7	chr2	96179859	96213827
STARD8_chrX_68642666_68730836	1/1	c0001	3312	153	39	22	69	4	17	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0002	3312	8	7	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0003	3312	5	5	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0004	3312	4	4	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0005	3312	4	0	4	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0006	3312	3	2	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0007	3312	2	2	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0008	3312	2	0	1	0	1	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0009	3312	2	0	0	0	0	2	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0010	3312	2	2	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0011	3312	2	0	2	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0012	3309	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0013	3312	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0014	3312	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0015	3312	1	0	0	1	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0016	3312	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0017	3312	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0018	3312	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0019	3312	1	0	1	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0020	3312	1	0	0	0	0	1	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0021	3312	1	1	0	0	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0022	3312	1	0	0	1	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD8_chrX_68642666_68730836	0/0	c0023	3312	1	0	0	1	0	0	copy fasta	STARD8	chrX	68642666	68730836
STARD9_chr15_42570606_42725998	1/0	c0001	14103	61	7	15	25	0	13	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0002	14103	21	13	4	0	2	2	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0003	14103	15	6	0	8	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0004	14103	9	8	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0005	14103	7	0	0	7	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0006	14103	7	6	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0007	14103	5	5	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0008	14103	4	0	4	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0009	14103	4	0	0	4	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0010	14103	4	0	0	2	0	2	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0011	14103	3	3	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0012	14103	3	3	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998