JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STARD9_chr15_42570606_42725998	0/0	c0013	14103	3	3	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0014	14103	3	2	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0015	14103	2	0	2	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0016	14103	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0017	14103	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0018	14085	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0019	14103	2	0	0	2	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0020	14103	2	0	0	0	0	2	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0021	14103	2	0	0	2	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0022	14103	2	0	0	2	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0023	14103	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0024	14103	2	0	0	2	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0025	14103	2	2	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0026	14103	2	0	1	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0027	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0028	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0029	14103	1	0	0	0	1	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/1	c0030	14103	1	0	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0031	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0032	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0033	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0034	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0035	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0036	14103	1	0	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0037	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0038	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0039	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0040	14103	1	0	0	0	1	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0041	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0042	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0043	14103	1	0	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0044	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0045	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0046	14103	1	0	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0047	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0048	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0049	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0050	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0051	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0052	14103	1	0	0	0	1	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0053	14103	1	0	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0054	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0055	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0056	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0057	14103	1	1	0	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0058	14103	1	0	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0059	14103	1	0	0	1	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0060	14103	1	0	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0061	14103	1	0	1	0	0	0	copy fasta	STARD9	chr15	42570606	42725998
STARD9_chr15_42570606_42725998	0/0	c0062	14103	1	0	0	0	0	1	copy fasta	STARD9	chr15	42570606	42725998