JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STARD9_chr15_42570606_42725998	0/0	c0063	14103	1	0	0	0	1	0	copy fasta	STARD9	chr15	42570606	42725998
STAR_chr8_38137700_38155952	1/1	c0001	858	424	82	75	204	18	43	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	c0002	858	4	4	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	c0003	858	2	2	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	c0004	858	1	1	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	c0005	858	1	0	0	1	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	c0006	858	1	1	0	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	c0007	858	1	0	0	0	0	1	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	c0008	858	1	0	0	1	0	0	copy fasta	STAR	chr8	38137700	38155952
STAR_chr8_38137700_38155952	0/0	c0009	858	1	0	1	0	0	0	copy fasta	STAR	chr8	38137700	38155952
STAT1_chr2_190964149_191019171	1/1	c0001	2253	325	79	66	136	12	30	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0002	2253	66	9	4	45	2	6	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0003	2253	6	0	0	6	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0004	2253	4	0	4	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0005	2253	3	0	0	3	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0006	2253	3	0	0	3	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0007	2253	2	2	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0008	2253	1	1	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0009	2253	1	1	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0010	2253	1	0	0	1	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0011	2253	1	1	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT1_chr2_190964149_191019171	0/0	c0012	2253	1	1	0	0	0	0	copy fasta	STAT1	chr2	190964149	191019171
STAT2_chr12_56336597_56365107	1/1	c0001	2556	212	56	33	84	10	27	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0002	2556	20	19	1	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0003	2556	18	0	4	12	2	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0004	2556	5	5	0	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0005	2556	5	0	5	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0006	2556	2	0	2	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0007	2556	1	0	0	0	0	1	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0008	2573	1	0	0	1	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0009	2556	1	0	1	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0010	2556	1	0	1	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0011	2556	1	0	1	0	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT2_chr12_56336597_56365107	0/0	c0012	2556	1	0	0	1	0	0	copy fasta	STAT2	chr12	56336597	56365107
STAT3_chr17_42308324_42393442	1/1	c0001	2313	290	84	37	129	12	26	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	c0002	2313	5	0	5	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	c0003	2313	3	3	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	c0004	2313	2	0	0	2	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	c0005	2313	1	0	0	1	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT3_chr17_42308324_42393442	0/0	c0006	2313	1	1	0	0	0	0	copy fasta	STAT3	chr17	42308324	42393442
STAT4_chr2_191024576_191155994	1/1	c0001	2247	281	91	43	104	14	27	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	c0002	2247	2	2	0	0	0	0	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	c0003	2247	2	0	0	2	0	0	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	c0004	2247	1	0	1	0	0	0	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	c0005	2247	1	0	0	1	0	0	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	c0006	2247	1	0	0	1	0	0	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	c0007	2247	1	0	0	0	0	1	copy fasta	STAT4	chr2	191024576	191155994
STAT4_chr2_191024576_191155994	0/0	c0008	2247	1	1	0	0	0	0	copy fasta	STAT4	chr2	191024576	191155994
STAT5A_chr17_42283498_42316943	1/1	c0001	2385	233	57	50	81	10	33	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0002	2385	97	15	7	61	2	12	copy fasta	STAT5A	chr17	42283498	42316943