Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AADACL2_chr3_151728927_151766339	0/0	c0003	1206	3	0	0	3	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	c0004	1206	3	0	0	3	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	c0005	1206	2	0	0	0	0	2	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	c0006	1206	1	1	0	0	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	c0007	1206	1	0	1	0	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	c0008	1206	1	0	0	1	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	c0009	1206	1	0	0	1	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL3_chr1_12711110_12733760	1/0	c0001	1224	185	25	48	83	9	19	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0002	1224	50	17	1	22	0	10	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0003	1224	38	4	7	23	3	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0004	1224	27	2	3	21	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0005	1224	23	2	6	13	0	2	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0006	1224	15	13	2	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/1	c0007	1224	15	6	4	1	1	2	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0008	1224	9	0	0	9	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0009	1224	7	2	1	0	0	4	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0010	1224	6	6	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0011	1224	6	6	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0012	1224	5	0	0	1	2	2	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0013	1224	5	3	0	0	0	2	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0014	1224	5	0	1	1	0	3	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0015	1224	5	0	0	5	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0016	1224	5	0	0	5	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0017	1224	3	3	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0018	1224	2	1	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0019	1224	2	1	1	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0020	1224	2	0	0	2	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0021	1224	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0022	1224	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0023	1224	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0024	1224	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0025	1224	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0026	1224	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0027	1224	1	0	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0028	1224	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0029	1224	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0030	1224	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0031	1224	1	0	0	0	1	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0032	1224	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0033	1224	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0034	1224	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0035	1224	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0036	1224	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	c0037	1224	1	0	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL4_chr1_12639085_12672076	1/1	c0001	1224	290	64	62	124	10	28	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	c0002	1224	10	10	0	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	c0003	1224	6	5	1	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	c0004	1224	1	0	0	1	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	c0005	1224	1	0	1	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	c0006	1224	1	1	0	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076