Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABI3BP_chr3_100744156_100998421	0/0	c0024	5361	2	0	2	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0025	5361	2	0	0	1	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0026	5361	2	0	2	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0027	5361	2	1	0	0	1	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0028	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0029	5358	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0030	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0031	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0032	5361	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0033	5361	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0034	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0035	5361	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0036	5358	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0037	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0038	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0039	5358	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0040	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0041	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0042	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0043	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0044	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0045	5361	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0046	5358	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0047	5361	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0048	5361	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0049	5361	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0050	5361	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0051	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0052	5361	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0053	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0054	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0055	5361	1	0	0	0	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0056	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0057	5361	1	0	0	0	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0058	5361	1	0	0	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0059	5361	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0060	5361	1	0	0	0	1	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0061	5358	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0062	5361	1	1	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0063	5361	1	0	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3_chr17_49205707_49228225	0/1	c0001	1101	368	84	67	165	15	36	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0002	1101	41	2	13	16	1	9	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0003	1101	22	0	0	21	0	1	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0004	1101	5	5	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0005	1101	4	4	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0006	1101	1	0	0	1	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0007	1101	1	0	1	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0008	1101	1	1	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0009	1101	1	1	0	0	0	0	copy fasta	ABI3	chr17	49205707	49228225
ABI3_chr17_49205707_49228225	0/0	c0010	1101	1	0	1	0	0	0	copy fasta	ABI3	chr17	49205707	49228225