JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AXIN1_chr16_282440_357723	0/0	c0023	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0024	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0025	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0026	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0027	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0028	2589	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0029	2589	1	0	1	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0030	2589	1	1	0	0	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0031	2589	1	0	0	1	0	0	copy fasta	AXIN1	chr16	282440	357723
AXIN1_chr16_282440_357723	0/0	c0032	2589	1	0	0	0	0	1	copy fasta	AXIN1	chr16	282440	357723
AXIN2_chr17_65523563_65566648	0/1	c0001	2532	95	6	25	41	5	17	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0002	2532	93	30	12	36	4	11	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0003	2532	53	15	5	32	0	1	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0004	2532	39	8	10	9	3	9	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0005	2532	32	1	7	22	0	2	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	1/0	c0006	2532	27	3	1	21	1	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0007	2532	12	1	3	2	0	6	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0008	2532	9	1	6	1	1	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0009	2520	6	6	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0010	2532	5	1	1	3	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0011	2532	5	4	1	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0012	2532	4	0	2	2	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0013	2532	3	0	0	3	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0014	2532	3	3	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0015	2532	2	2	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0016	2532	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0017	2532	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0018	2532	1	0	0	1	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0019	2532	1	0	0	1	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0020	2532	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0021	2532	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0022	2532	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0023	2532	1	0	0	0	0	1	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0024	2532	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0025	2532	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0026	2532	1	0	0	0	0	1	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0027	2520	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0028	2520	1	1	0	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXIN2_chr17_65523563_65566648	0/0	c0029	2532	1	0	1	0	0	0	copy fasta	AXIN2	chr17	65523563	65566648
AXL_chr19_41214223_41266766	1/1	c0001	2685	293	80	60	107	10	34	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0002	2685	4	4	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0003	2685	4	4	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0004	2685	3	0	0	3	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0005	2685	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0006	2685	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0007	2685	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0008	2685	1	0	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0009	2685	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0010	2685	1	0	0	1	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0011	2685	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766