JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STAT5A_chr17_42283498_42316943	0/0	c0003	2385	14	11	2	0	0	1	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0004	2385	5	5	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0005	2385	2	2	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0006	2385	1	0	0	0	0	1	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0007	2385	1	0	0	0	0	1	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0008	2385	1	1	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0009	2385	1	0	0	1	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0010	2385	1	0	1	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0011	2385	1	1	0	0	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5A_chr17_42283498_42316943	0/0	c0012	2385	1	0	0	1	0	0	copy fasta	STAT5A	chr17	42283498	42316943
STAT5B_chr17_42194177_42281391	1/1	c0001	2364	246	78	35	93	8	30	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0002	2364	4	0	0	0	0	4	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0003	2364	2	2	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0004	2364	1	0	0	1	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0005	2364	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0006	2364	1	0	1	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0007	2364	1	0	0	1	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0008	2364	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0009	2364	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0010	2364	1	1	0	0	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT5B_chr17_42194177_42281391	0/0	c0011	2364	1	0	0	1	0	0	copy fasta	STAT5B	chr17	42194177	42281391
STAT6_chr12_57090408_57116362	1/1	c0001	2544	350	84	73	137	14	40	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	c0002	2544	6	2	4	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	c0003	2544	5	0	1	4	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	c0004	2544	3	3	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	c0005	2544	3	0	0	3	0	0	copy fasta	STAT6	chr12	57090408	57116362
STAT6_chr12_57090408_57116362	0/0	c0006	2544	1	1	0	0	0	0	copy fasta	STAT6	chr12	57090408	57116362
STATH_chr4_69990966_70007570	1/1	c0001	189	406	85	78	179	18	44	copy fasta	STATH	chr4	69990966	70007570
STATH_chr4_69990966_70007570	0/0	c0002	189	3	0	0	3	0	0	copy fasta	STATH	chr4	69990966	70007570
STATH_chr4_69990966_70007570	0/0	c0003	189	1	1	0	0	0	0	copy fasta	STATH	chr4	69990966	70007570
STAU1_chr20_49108339_49193334	1/1	c0001	1734	349	81	62	158	8	38	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0002	1734	5	0	5	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0003	1734	3	3	0	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0004	1734	2	0	0	0	0	2	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0005	1734	1	0	0	1	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0006	1734	1	0	0	1	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0007	1734	1	0	0	0	0	1	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0008	1734	1	0	0	1	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0009	1734	1	0	0	0	0	1	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0010	1734	1	0	1	0	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU1_chr20_49108339_49193334	0/0	c0011	1734	1	0	0	1	0	0	copy fasta	STAU1	chr20	49108339	49193334
STAU2_chr8_73415369_73751840	0/1	c0001	1713	188	44	35	85	8	15	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	1/0	c0002	1713	25	13	3	3	0	5	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	c0003	1713	15	14	1	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	c0004	1713	6	0	5	1	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	c0005	1713	2	0	2	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	c0006	1713	2	2	0	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	c0007	1713	1	1	0	0	0	0	copy fasta	STAU2	chr8	73415369	73751840
STAU2_chr8_73415369_73751840	0/0	c0008	1713	1	0	0	1	0	0	copy fasta	STAU2	chr8	73415369	73751840
STBD1_chr4_76301733_76316130	1/0	c0001	1077	428	84	77	207	18	41	copy fasta	STBD1	chr4	76301733	76316130