JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STBD1_chr4_76301733_76316130	0/0	c0002	1077	10	9	1	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	c0003	1077	2	2	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/1	c0004	1077	1	0	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	c0005	1077	1	0	0	0	0	1	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	c0006	1077	1	1	0	0	0	0	copy fasta	STBD1	chr4	76301733	76316130
STBD1_chr4_76301733_76316130	0/0	c0007	1077	1	0	0	1	0	0	copy fasta	STBD1	chr4	76301733	76316130
STC1_chr8_23836929_23859806	1/1	c0001	744	442	98	78	200	16	48	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	c0002	744	1	0	0	1	0	0	copy fasta	STC1	chr8	23836929	23859806
STC1_chr8_23836929_23859806	0/0	c0003	744	1	0	0	1	0	0	copy fasta	STC1	chr8	23836929	23859806
STC2_chr5_173309723_173333414	0/0	c0001	909	404	78	76	187	18	45	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0002	909	25	14	5	3	0	3	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0003	909	6	0	1	5	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0004	909	3	0	0	3	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0005	909	2	2	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0006	909	2	2	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0007	909	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0008	909	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0009	909	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0010	909	1	1	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0011	909	1	0	0	1	0	0	copy fasta	STC2	chr5	173309723	173333414
STC2_chr5_173309723_173333414	0/0	c0012	909	1	1	0	0	0	0	copy fasta	STC2	chr5	173309723	173333414
STEAP1B_chr7_22414444_22505188	1/0	c0001	795	153	30	27	75	4	16	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	c0002	795	121	27	15	61	1	17	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/1	c0003	795	59	14	11	28	0	5	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	c0004	795	26	4	9	11	1	1	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	c0005	795	15	6	4	0	2	3	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	c0006	795	4	0	0	4	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	c0007	795	2	0	0	2	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	c0008	795	1	0	0	1	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	c0009	795	1	0	0	0	0	1	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	c0010	795	1	1	0	0	0	0	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1B_chr7_22414444_22505188	0/0	c0011	795	1	0	0	0	0	1	copy fasta	STEAP1B	chr7	22414444	22505188
STEAP1_chr7_90149469_90169827	1/1	c0001	1020	416	91	67	197	16	43	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	c0002	1020	2	0	0	2	0	0	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	c0003	1020	1	0	1	0	0	0	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	c0004	762	1	1	0	0	0	0	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	c0005	1020	1	0	0	1	0	0	copy fasta	STEAP1	chr7	90149469	90169827
STEAP1_chr7_90149469_90169827	0/0	c0006	1020	1	0	0	0	0	1	copy fasta	STEAP1	chr7	90149469	90169827
STEAP2_chr7_90206740_90242683	0/0	c0001	1473	201	45	25	108	4	19	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/1	c0002	1473	96	17	16	51	2	9	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	c0003	1473	46	17	2	22	0	5	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	1/0	c0004	1473	19	5	10	0	2	1	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	c0005	1473	15	0	4	6	1	4	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	c0006	1473	4	0	3	0	1	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	c0007	1473	2	0	0	0	0	2	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	c0008	1473	2	2	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	c0009	1473	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	c0010	1473	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	c0011	1473	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP2_chr7_90206740_90242683	0/0	c0012	1473	1	1	0	0	0	0	copy fasta	STEAP2	chr7	90206740	90242683