JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STEAP2_chr7_90206740_90242683	0/0	c0013	1473	1	0	0	1	0	0	copy fasta	STEAP2	chr7	90206740	90242683
STEAP3_chr2_119218834_119270652	1/0	c0001	1497	274	56	50	130	10	27	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0002	1497	31	28	2	0	1	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0003	1497	9	0	5	0	3	1	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0004	1497	6	6	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/1	c0005	1497	6	0	0	0	0	5	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0006	1497	5	0	0	5	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0007	1497	3	0	0	0	0	3	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0008	1497	2	2	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0009	1497	2	0	2	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0010	1497	2	0	0	0	0	2	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0011	1497	2	2	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0012	1497	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0013	1497	1	0	1	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0014	1497	1	0	0	0	0	1	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0015	1497	1	0	0	0	0	1	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0016	1497	1	1	0	0	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP3_chr2_119218834_119270652	0/0	c0017	1497	1	0	0	1	0	0	copy fasta	STEAP3	chr2	119218834	119270652
STEAP4_chr7_88265892_88311894	0/0	c0001	1380	235	69	40	101	4	21	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	1/0	c0002	1380	48	0	14	21	3	9	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/1	c0003	1380	28	5	9	2	5	6	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	c0004	1380	3	3	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	c0005	1380	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	c0006	1380	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	c0007	1380	1	1	0	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEAP4_chr7_88265892_88311894	0/0	c0008	1380	1	0	1	0	0	0	copy fasta	STEAP4	chr7	88265892	88311894
STEEP1_chrX_119533149_119570409	0/1	c0001	669	158	25	28	86	5	13	copy fasta	STEEP1	chrX	119533149	119570409
STEEP1_chrX_119533149_119570409	1/0	c0002	669	135	51	25	35	6	17	copy fasta	STEEP1	chrX	119533149	119570409
STH_chr17_45994250_46004694	0/1	c0001	387	379	80	72	182	14	30	copy fasta	STH	chr17	45994250	46004694
STH_chr17_45994250_46004694	0/0	c0002	387	23	3	8	1	3	8	copy fasta	STH	chr17	45994250	46004694
STH_chr17_45994250_46004694	0/0	c0003	387	15	15	0	0	0	0	copy fasta	STH	chr17	45994250	46004694
STH_chr17_45994250_46004694	0/0	c0004	387	1	0	0	1	0	0	copy fasta	STH	chr17	45994250	46004694
STH_chr17_45994250_46004694	0/0	c0005	387	1	0	0	0	1	0	copy fasta	STH	chr17	45994250	46004694
STIL_chr1_47245139_47319147	0/1	c0001	3867	122	4	25	70	7	15	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0002	3867	99	33	4	56	0	6	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0003	3867	94	26	18	43	3	4	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0004	3867	56	23	13	2	5	13	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0005	3867	4	4	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0006	3867	2	0	0	2	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0007	3867	2	2	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0008	3867	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	1/0	c0009	3867	1	0	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0010	3867	1	0	0	0	1	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0011	3867	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0012	3867	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0013	3867	1	0	1	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0014	3867	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0015	3867	1	0	0	0	0	1	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0016	3867	1	0	1	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0017	3867	1	1	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147