JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STIL_chr1_47245139_47319147	0/0	c0018	3867	1	1	0	0	0	0	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0019	3867	1	0	0	0	0	1	copy fasta	STIL	chr1	47245139	47319147
STIL_chr1_47245139_47319147	0/0	c0020	3867	1	0	0	1	0	0	copy fasta	STIL	chr1	47245139	47319147
STIM1_chr11_3850664_4098208	1/1	c0001	2151	178	56	33	67	5	15	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0002	2151	94	7	13	58	5	11	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0003	2151	7	0	0	5	0	2	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0004	2151	4	4	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0005	2151	4	4	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0006	2151	2	0	0	0	0	2	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0007	2151	2	2	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0008	2151	2	0	0	2	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0009	2151	1	0	0	1	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0010	2151	1	1	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0011	2151	1	0	0	0	0	1	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0012	2151	1	1	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0013	2151	1	0	0	1	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0014	2151	1	0	0	0	0	1	copy fasta	STIM1	chr11	3850664	4098208
STIM1_chr11_3850664_4098208	0/0	c0015	2151	1	1	0	0	0	0	copy fasta	STIM1	chr11	3850664	4098208
STIM2_chr4_26855841_27030381	0/1	c0001	2241	323	75	55	151	8	33	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	1/0	c0002	2241	9	5	3	0	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	c0003	2241	1	0	0	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	c0004	2241	1	0	0	0	0	1	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	c0005	2241	1	0	0	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIM2_chr4_26855841_27030381	0/0	c0006	2241	1	0	0	1	0	0	copy fasta	STIM2	chr4	26855841	27030381
STIMATE_chr3_52831733_52902548	1/1	c0001	885	331	82	69	132	6	40	copy fasta	STIMATE	chr3	52831733	52902548
STIMATE_chr3_52831733_52902548	0/0	c0002	885	3	0	3	0	0	0	copy fasta	STIMATE	chr3	52831733	52902548
STING1_chr5_139470533_139487758	0/1	c0001	1140	148	6	34	72	8	27	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0002	1140	124	2	14	89	5	14	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	1/0	c0003	1140	60	12	15	25	3	4	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0004	1140	60	43	4	13	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0005	1140	27	26	0	1	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0006	1140	4	4	0	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0007	1140	3	3	0	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0008	1140	3	0	0	3	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0009	1140	2	0	1	1	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0010	1140	1	0	0	0	0	1	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0011	1140	1	0	1	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STING1_chr5_139470533_139487758	0/0	c0012	1140	1	0	1	0	0	0	copy fasta	STING1	chr5	139470533	139487758
STIP1_chr11_64181171_64209543	1/1	c0001	1632	340	81	61	150	14	32	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	c0002	1632	25	1	7	11	0	6	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	c0003	1632	3	0	0	1	0	2	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	c0004	1632	3	3	0	0	0	0	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	c0005	1632	2	2	0	0	0	0	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	c0006	1632	1	1	0	0	0	0	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	c0007	1632	1	0	0	1	0	0	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	c0008	1632	1	0	0	1	0	0	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	c0009	1632	1	0	1	0	0	0	copy fasta	STIP1	chr11	64181171	64209543
STIP1_chr11_64181171_64209543	0/0	c0010	1632	1	0	1	0	0	0	copy fasta	STIP1	chr11	64181171	64209543
STK10_chr5_172037079_172193224	0/0	c0001	2907	59	13	13	20	2	11	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/1	c0002	2907	43	15	10	10	3	4	copy fasta	STK10	chr5	172037079	172193224