JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STK10_chr5_172037079_172193224	0/0	c0003	2907	37	13	10	8	1	5	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0004	2907	21	10	2	6	0	3	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0005	2907	19	3	8	3	3	2	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0006	2907	8	7	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0007	2907	7	7	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0008	2907	4	4	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0009	2907	4	1	0	3	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0010	2907	4	2	2	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0011	2907	2	2	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	1/0	c0012	2907	2	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0013	2907	2	2	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0014	2907	2	2	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0015	2907	1	0	0	1	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0016	2907	1	0	0	0	1	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0017	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0018	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0019	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0020	2907	1	0	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0021	2907	1	0	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0022	2907	1	0	0	0	0	1	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0023	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0024	2907	1	0	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0025	2907	1	0	1	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0026	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0027	2907	1	0	0	1	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0028	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0029	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0030	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0031	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK10_chr5_172037079_172193224	0/0	c0032	2907	1	1	0	0	0	0	copy fasta	STK10	chr5	172037079	172193224
STK11IP_chr2_219592857_219621451	0/0	c0001	3267	124	22	27	48	7	20	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/1	c0002	3267	114	4	29	58	7	15	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	1/0	c0003	3267	53	45	6	0	0	1	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0004	3267	9	0	7	2	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0005	3267	6	6	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0006	3267	5	5	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0007	3267	4	4	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0008	3267	3	3	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0009	3267	3	3	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0010	3267	2	0	0	2	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0011	3267	1	0	0	0	1	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0012	3267	1	0	1	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0013	3267	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0014	3267	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0015	3267	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0016	3267	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0017	3267	1	1	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0018	3267	1	1	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0019	3267	1	1	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0020	3267	1	1	0	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451