JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STK11IP_chr2_219592857_219621451	0/0	c0021	3267	1	0	1	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0022	3267	1	0	1	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0023	3267	1	0	0	0	0	1	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0024	3267	1	0	0	0	1	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0025	3267	1	0	1	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0026	3292	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0027	3267	1	0	0	0	0	1	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0028	3267	1	0	1	0	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11IP_chr2_219592857_219621451	0/0	c0029	3267	1	0	0	1	0	0	copy fasta	STK11IP	chr2	219592857	219621451
STK11_chr19_1200778_1233431	1/1	c0001	1302	370	74	76	157	15	46	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0002	1302	9	7	1	0	1	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0003	1302	6	0	0	6	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0004	1302	5	5	0	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0005	1302	3	2	1	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0006	1302	3	0	0	3	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0007	1302	3	0	0	3	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0008	1302	2	0	2	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0009	1302	1	1	0	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0010	1302	1	1	0	0	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0011	1302	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0012	1302	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK11_chr19_1200778_1233431	0/0	c0013	1302	1	0	0	1	0	0	copy fasta	STK11	chr19	1200778	1233431
STK16_chr2_219240479_219255337	0/1	c0001	918	389	73	69	185	16	45	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	1/0	c0002	918	8	6	1	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	c0003	918	4	0	4	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	c0004	918	3	3	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	c0005	918	2	0	2	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	c0006	918	1	1	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	c0007	918	1	0	0	1	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	c0008	918	1	1	0	0	0	0	copy fasta	STK16	chr2	219240479	219255337
STK16_chr2_219240479_219255337	0/0	c0009	918	1	0	0	0	0	1	copy fasta	STK16	chr2	219240479	219255337
STK17A_chr7_43578108_43632379	0/1	c0001	1245	239	46	51	113	8	20	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	1/0	c0002	1245	76	5	11	44	5	10	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0003	1245	22	0	12	1	4	5	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0004	1245	11	0	0	11	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0005	1245	9	8	1	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0006	1245	7	7	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0007	1245	6	6	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0008	1245	5	0	0	5	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0009	1245	4	3	1	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0010	1245	4	0	0	4	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0011	1245	2	2	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0012	1245	2	2	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0013	1245	1	1	0	0	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0014	1245	1	0	0	0	1	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0015	1245	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0016	1245	1	0	0	1	0	0	copy fasta	STK17A	chr7	43578108	43632379
STK17A_chr7_43578108_43632379	0/0	c0017	1245	1	0	0	0	0	1	copy fasta	STK17A	chr7	43578108	43632379
STK17B_chr2_196128583_196176578	0/0	c0001	1119	137	7	32	71	5	22	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	1/1	c0002	1119	113	46	23	21	7	14	copy fasta	STK17B	chr2	196128583	196176578