JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STK17B_chr2_196128583_196176578	0/0	c0003	1119	91	32	6	52	1	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	c0004	1119	12	10	1	0	0	1	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	c0005	1119	3	0	0	3	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	c0006	1119	2	0	0	1	0	1	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	c0007	1119	1	0	0	0	1	0	copy fasta	STK17B	chr2	196128583	196176578
STK17B_chr2_196128583_196176578	0/0	c0008	1119	1	1	0	0	0	0	copy fasta	STK17B	chr2	196128583	196176578
STK19_chr6_31967363_31986446	0/1	c0001	765	330	61	57	165	14	32	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	c0002	765	63	26	10	16	3	8	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	c0003	765	21	0	0	21	0	0	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	c0004	765	14	6	3	2	1	2	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	c0005	765	2	0	0	2	0	0	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	c0006	765	2	0	0	2	0	0	copy fasta	STK19	chr6	31967363	31986446
STK19_chr6_31967363_31986446	0/0	c0007	765	1	1	0	0	0	0	copy fasta	STK19	chr6	31967363	31986446
STK24_chr13_98440185_98582107	0/1	c0001	1296	316	76	64	121	16	38	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	1/0	c0002	1296	3	2	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	c0003	1296	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	c0004	1296	1	0	0	1	0	0	copy fasta	STK24	chr13	98440185	98582107
STK24_chr13_98440185_98582107	0/0	c0005	1296	1	1	0	0	0	0	copy fasta	STK24	chr13	98440185	98582107
STK25_chr2_241487670_241513584	1/1	c0001	1281	414	81	72	199	16	44	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0002	1281	13	0	1	8	0	4	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0003	1281	5	5	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0004	1281	3	3	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0005	1281	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0006	1281	1	0	1	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0007	1281	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0008	1281	1	0	1	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0009	1296	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0010	1281	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0011	1281	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0012	1281	1	1	0	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0013	1281	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0014	1281	1	0	1	0	0	0	copy fasta	STK25	chr2	241487670	241513584
STK25_chr2_241487670_241513584	0/0	c0015	1281	1	0	0	1	0	0	copy fasta	STK25	chr2	241487670	241513584
STK26_chrX_132018302_132080943	1/1	c0001	1251	240	66	37	96	11	28	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	c0002	1251	2	0	0	2	0	0	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	c0003	1251	1	0	1	0	0	0	copy fasta	STK26	chrX	132018302	132080943
STK26_chrX_132018302_132080943	0/0	c0004	1251	1	0	0	1	0	0	copy fasta	STK26	chrX	132018302	132080943
STK31_chr7_23705219_23837513	0/0	c0001	3060	115	19	19	62	5	10	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0002	3060	90	14	17	47	4	8	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0003	3060	89	13	16	49	1	10	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/1	c0004	3060	22	12	6	0	1	2	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	1/0	c0005	3060	17	9	2	5	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0006	3060	15	5	3	5	1	1	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0007	3060	12	1	7	0	2	2	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0008	3060	5	5	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0009	3060	5	0	0	0	0	5	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0010	3060	4	0	0	3	0	1	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0011	3060	3	0	0	3	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0012	3060	2	0	0	0	0	2	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0013	3060	2	0	2	0	0	0	copy fasta	STK31	chr7	23705219	23837513