JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STK31_chr7_23705219_23837513	0/0	c0014	3060	2	0	0	1	1	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0015	3060	2	0	0	1	0	1	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0016	3060	2	2	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0017	3060	2	2	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0018	3060	2	2	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0019	3060	2	2	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0020	3060	1	0	0	0	1	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0021	3060	1	1	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0022	3060	1	0	1	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0023	3060	1	0	0	1	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0024	3060	1	1	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0025	3060	1	0	0	1	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0026	3060	1	1	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0027	3060	1	0	1	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0028	3060	1	1	0	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0029	3060	1	0	1	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK31_chr7_23705219_23837513	0/0	c0030	3060	1	0	1	0	0	0	copy fasta	STK31	chr7	23705219	23837513
STK32A_chr5_147230026_147392855	0/1	c0001	1191	156	56	37	42	5	15	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	1/0	c0002	1191	154	29	17	80	5	22	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	c0003	1191	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	c0004	1191	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	c0005	1191	1	0	0	0	0	1	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	c0006	1191	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	c0007	1191	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32A_chr5_147230026_147392855	0/0	c0008	1191	1	1	0	0	0	0	copy fasta	STK32A	chr5	147230026	147392855
STK32B_chr4_5046480_5505989	1/1	c0001	1245	97	45	23	17	4	6	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0002	1245	38	2	9	22	2	3	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0003	1245	15	10	4	1	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0004	1245	10	6	0	3	0	1	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0005	1245	3	1	2	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0006	1245	2	1	1	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0007	1245	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0008	1245	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0009	1245	1	1	0	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0010	1245	1	0	0	1	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32B_chr4_5046480_5505989	0/0	c0011	1245	1	0	1	0	0	0	copy fasta	STK32B	chr4	5046480	5505989
STK32C_chr10_132202492_132312950	0/1	c0001	1461	234	58	43	90	12	30	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	1/0	c0002	1461	42	11	6	16	3	5	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0003	1461	29	0	8	17	1	3	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0004	1461	8	2	1	4	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0005	1461	8	6	1	0	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0006	1461	7	7	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0007	1461	7	1	0	1	0	5	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0008	1461	5	0	2	2	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0009	1461	3	0	3	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0010	1461	3	0	0	3	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0011	1461	3	3	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0012	1461	3	3	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0013	1461	2	0	0	2	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0014	1461	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950