JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STK32C_chr10_132202492_132312950	0/0	c0015	1461	1	0	0	0	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0016	1461	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0017	1461	1	0	0	0	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0018	1461	1	0	0	1	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0019	1454	1	0	0	1	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0020	1461	1	0	0	1	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0021	1461	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0022	1461	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0023	1461	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0024	1461	1	0	0	0	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0025	1461	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0026	1461	1	1	0	0	0	0	copy fasta	STK32C	chr10	132202492	132312950
STK32C_chr10_132202492_132312950	0/0	c0027	1461	1	0	0	0	0	1	copy fasta	STK32C	chr10	132202492	132312950
STK33_chr11_8386870_8599228	1/0	c0001	1545	151	53	25	55	7	10	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/1	c0002	1545	96	23	8	58	1	5	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	c0003	1545	57	7	16	21	3	10	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	c0004	1545	19	2	3	11	0	3	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	c0005	1545	4	0	0	4	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	c0006	1545	2	0	0	0	0	2	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	c0007	1545	1	0	0	0	0	1	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	c0008	1545	1	0	0	0	0	1	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	c0009	1545	1	0	0	0	1	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	c0010	1545	1	0	0	1	0	0	copy fasta	STK33	chr11	8386870	8599228
STK33_chr11_8386870_8599228	0/0	c0011	1545	1	1	0	0	0	0	copy fasta	STK33	chr11	8386870	8599228
STK35_chr20_2096827_2153555	0/0	c0001	1605	86	8	20	43	2	13	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0002	1605	82	29	24	19	1	9	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	1/1	c0003	1605	79	23	26	16	1	11	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0004	1605	13	11	0	1	0	1	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0005	1605	4	4	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0006	1605	1	0	0	1	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0007	1605	1	1	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0008	1605	1	0	0	1	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0009	1605	1	0	0	1	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0010	1605	1	0	1	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0011	1605	1	0	1	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0012	1605	1	1	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK35_chr20_2096827_2153555	0/0	c0013	1605	1	1	0	0	0	0	copy fasta	STK35	chr20	2096827	2153555
STK36_chr2_218667086_218707715	1/1	c0001	3948	81	6	25	34	5	9	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0002	3948	44	1	14	11	7	11	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0003	3948	27	4	1	18	0	4	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0004	3948	23	23	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0005	3948	17	17	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0006	3948	15	0	2	13	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0007	3948	12	12	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0008	3948	8	0	2	6	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0009	3948	7	7	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0010	3948	7	6	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0011	3948	5	0	5	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0012	3948	3	3	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0013	3948	2	1	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715