JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STK36_chr2_218667086_218707715	0/0	c0014	3948	2	0	0	2	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0015	3948	2	2	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0016	3948	2	0	1	0	1	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0017	3948	2	2	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0018	3948	2	2	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0019	3948	2	0	0	2	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0020	3948	1	0	0	0	0	1	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0021	3948	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0022	3948	1	0	0	0	1	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0023	3948	1	0	0	0	0	1	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0024	3948	1	0	0	1	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0025	3948	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0026	3948	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0027	3948	1	0	0	0	0	1	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0028	3948	1	0	0	0	0	1	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0029	3948	1	0	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0030	3948	1	0	0	1	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0031	3948	1	0	0	1	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0032	3948	1	0	1	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0033	3948	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0034	3948	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0035	3948	1	1	0	0	0	0	copy fasta	STK36	chr2	218667086	218707715
STK36_chr2_218667086_218707715	0/0	c0036	3948	1	0	0	1	0	0	copy fasta	STK36	chr2	218667086	218707715
STK38L_chr12_27239286_27330959	0/1	c0001	1395	354	73	60	178	8	34	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	0/0	c0002	1395	13	12	1	0	0	0	copy fasta	STK38L	chr12	27239286	27330959
STK38L_chr12_27239286_27330959	1/0	c0003	1395	7	1	3	0	0	2	copy fasta	STK38L	chr12	27239286	27330959
STK38_chr6_36488892_36552479	1/1	c0001	1398	342	85	76	131	12	36	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	c0002	1398	54	2	2	48	0	2	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	c0003	1398	1	0	0	1	0	0	copy fasta	STK38	chr6	36488892	36552479
STK38_chr6_36488892_36552479	0/0	c0004	1398	1	1	0	0	0	0	copy fasta	STK38	chr6	36488892	36552479
STK39_chr2_167949022_168252595	1/1	c0001	1638	182	55	22	83	4	16	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0002	1644	70	18	13	24	4	11	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0003	1638	4	4	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0004	1638	4	2	2	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0005	1638	3	2	1	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0006	1638	2	1	1	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0007	1611	1	0	0	0	0	1	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0008	1638	1	0	0	1	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0009	1638	1	0	1	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0010	1638	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK39_chr2_167949022_168252595	0/0	c0011	1638	1	1	0	0	0	0	copy fasta	STK39	chr2	167949022	168252595
STK3_chr8_98449633_98830688	1/1	c0001	1476	166	49	28	62	8	17	copy fasta	STK3	chr8	98449633	98830688
STK3_chr8_98449633_98830688	0/0	c0002	1476	3	1	0	2	0	0	copy fasta	STK3	chr8	98449633	98830688
STK3_chr8_98449633_98830688	0/0	c0003	1476	1	0	0	0	0	1	copy fasta	STK3	chr8	98449633	98830688
STK40_chr1_36334628_36390924	1/0	c0001	1308	208	48	41	84	11	23	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	c0002	1308	67	19	15	20	5	8	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/1	c0003	1308	36	7	8	8	2	10	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	c0004	1308	19	0	4	15	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	c0005	1308	7	6	1	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	c0006	1308	7	5	2	0	0	0	copy fasta	STK40	chr1	36334628	36390924