JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AXL_chr19_41214223_41266766	0/0	c0012	2685	1	0	1	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0013	2685	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AXL_chr19_41214223_41266766	0/0	c0014	2685	1	1	0	0	0	0	copy fasta	AXL	chr19	41214223	41266766
AZGP1_chr7_99961730_99981031	1/1	c0001	897	245	87	39	78	10	29	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0002	897	164	8	35	99	6	16	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0003	897	6	0	0	6	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0004	898	5	0	0	5	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0005	897	3	0	0	0	2	1	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0006	898	2	0	1	1	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0007	413	2	0	0	2	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0008	897	2	0	0	2	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0009	897	1	0	0	1	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0010	897	1	1	0	0	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZGP1_chr7_99961730_99981031	0/0	c0011	897	1	0	1	0	0	0	copy fasta	AZGP1	chr7	99961730	99981031
AZI2_chr3_28316047_28353824	1/1	c0001	1179	359	89	68	146	14	40	copy fasta	AZI2	chr3	28316047	28353824
AZI2_chr3_28316047_28353824	0/0	c0002	1179	1	1	0	0	0	0	copy fasta	AZI2	chr3	28316047	28353824
AZIN1_chr8_102821308_102869163	1/1	c0001	1347	260	87	54	83	11	23	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	c0002	1347	64	3	9	32	3	17	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	c0003	1347	51	0	4	46	0	1	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	c0004	1347	2	1	0	0	0	1	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	c0005	1347	1	0	0	1	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	c0006	1347	1	1	0	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN1_chr8_102821308_102869163	0/0	c0007	1347	1	0	1	0	0	0	copy fasta	AZIN1	chr8	102821308	102869163
AZIN2_chr1_33076153_33128492	1/1	c0001	1383	270	74	48	107	10	29	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0002	1383	16	0	13	3	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0003	1383	15	0	4	11	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0004	1383	12	11	1	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0005	1383	3	3	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0006	1383	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0007	1383	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0008	1383	1	0	0	1	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0009	1383	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0010	1383	1	1	0	0	0	0	copy fasta	AZIN2	chr1	33076153	33128492
AZIN2_chr1_33076153_33128492	0/0	c0011	1383	1	0	0	0	0	1	copy fasta	AZIN2	chr1	33076153	33128492
AZU1_chr19_822837_837018	0/0	c0001	756	144	6	26	90	6	16	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/1	c0002	756	132	16	31	64	5	15	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0003	756	55	33	11	3	2	6	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0004	756	32	31	1	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0005	756	11	1	2	2	1	5	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0006	756	3	3	0	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0007	756	2	0	0	0	2	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0008	756	2	0	0	2	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0009	756	2	2	0	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0010	756	1	0	1	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0011	756	1	0	0	1	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0012	756	1	0	1	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0013	756	1	0	1	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0014	753	1	0	1	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0015	756	1	0	1	0	0	0	copy fasta	AZU1	chr19	822837	837018
AZU1_chr19_822837_837018	0/0	c0016	756	1	0	0	1	0	0	copy fasta	AZU1	chr19	822837	837018