JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STK40_chr1_36334628_36390924	0/0	c0007	1308	3	2	1	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	c0008	1308	1	1	0	0	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	c0009	1308	1	0	0	1	0	0	copy fasta	STK40	chr1	36334628	36390924
STK40_chr1_36334628_36390924	0/0	c0010	1308	1	0	0	0	0	1	copy fasta	STK40	chr1	36334628	36390924
STK4_chr20_44961512_45085021	1/0	c0001	1464	275	77	35	130	5	27	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/1	c0002	1464	46	11	13	1	9	11	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	c0003	1464	4	0	0	4	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	c0004	1464	1	0	0	1	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	c0005	1464	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STK4_chr20_44961512_45085021	0/0	c0006	1464	1	1	0	0	0	0	copy fasta	STK4	chr20	44961512	45085021
STKLD1_chr9_133371366_133411096	0/0	c0001	2043	118	29	21	56	3	9	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/1	c0002	2043	90	11	30	29	4	15	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0003	2043	48	8	6	31	0	3	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0004	2043	17	1	4	5	1	6	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	1/0	c0005	2043	17	5	2	2	5	2	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0006	2043	7	0	2	0	2	3	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0007	2043	5	5	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0008	2043	5	5	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0009	2043	4	0	0	4	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0010	2043	4	0	2	0	0	2	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0011	2043	4	0	0	4	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0012	2043	4	2	1	0	1	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0013	2043	4	4	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0014	2043	3	3	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0015	2043	3	3	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0016	2043	3	3	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0017	2043	2	1	1	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0018	2043	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0019	2043	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0020	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0021	2043	1	0	1	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0022	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0023	2043	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0024	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0025	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0026	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0027	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0028	2043	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0029	2043	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0030	2043	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0031	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0032	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0033	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0034	2043	1	0	0	1	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STKLD1_chr9_133371366_133411096	0/0	c0035	2043	1	1	0	0	0	0	copy fasta	STKLD1	chr9	133371366	133411096
STMN1_chr1_25895116_25911419	1/1	c0001	450	382	92	66	176	12	34	copy fasta	STMN1	chr1	25895116	25911419
STMN2_chr8_79606117_79671158	1/1	c0001	540	396	82	73	176	16	47	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	c0002	540	5	4	1	0	0	0	copy fasta	STMN2	chr8	79606117	79671158
STMN2_chr8_79606117_79671158	0/0	c0003	540	1	0	0	0	0	1	copy fasta	STMN2	chr8	79606117	79671158
STMN3_chr20_63634712_63658424	1/1	c0001	543	383	91	78	152	18	42	copy fasta	STMN3	chr20	63634712	63658424