JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STMN3_chr20_63634712_63658424	0/0	c0002	543	4	0	0	4	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN3_chr20_63634712_63658424	0/0	c0003	543	1	1	0	0	0	0	copy fasta	STMN3	chr20	63634712	63658424
STMN4_chr8_27230308_27263404	1/1	c0001	651	433	93	80	198	18	42	copy fasta	STMN4	chr8	27230308	27263404
STMN4_chr8_27230308_27263404	0/0	c0002	651	1	1	0	0	0	0	copy fasta	STMN4	chr8	27230308	27263404
STMND1_chr6_17097050_17136378	1/1	c0001	831	421	87	78	191	17	46	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	c0002	831	4	4	0	0	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	c0003	831	2	1	0	1	0	0	copy fasta	STMND1	chr6	17097050	17136378
STMND1_chr6_17097050_17136378	0/0	c0004	831	1	0	0	0	1	0	copy fasta	STMND1	chr6	17097050	17136378
STMP1_chr7_135657514_135681416	1/1	c0001	144	390	89	72	168	14	45	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	c0002	144	1	0	0	0	0	1	copy fasta	STMP1	chr7	135657514	135681416
STMP1_chr7_135657514_135681416	0/0	c0003	144	1	1	0	0	0	0	copy fasta	STMP1	chr7	135657514	135681416
STN1_chr10_103872569_103923184	0/1	c0001	1107	248	41	38	126	9	33	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	c0002	1107	81	14	14	43	4	6	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	1/0	c0003	1107	44	30	11	0	1	1	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	c0004	1107	3	0	0	3	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	c0005	1107	2	0	0	0	0	2	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	c0006	1107	2	2	0	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	c0007	1107	1	0	1	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STN1_chr10_103872569_103923184	0/0	c0008	1107	1	1	0	0	0	0	copy fasta	STN1	chr10	103872569	103923184
STOML1_chr15_73973926_73997295	0/1	c0001	1197	298	79	49	129	9	31	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	1/0	c0002	1197	119	14	29	57	5	13	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	c0003	1197	2	1	1	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	c0004	1197	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	c0005	1197	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	c0006	1197	1	0	1	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	c0007	1197	1	1	0	0	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML1_chr15_73973926_73997295	0/0	c0008	1197	1	0	0	1	0	0	copy fasta	STOML1	chr15	73973926	73997295
STOML2_chr9_35094778_35108131	1/1	c0001	1071	409	85	65	201	13	43	copy fasta	STOML2	chr9	35094778	35108131
STOML2_chr9_35094778_35108131	0/0	c0002	1071	12	7	3	0	1	1	copy fasta	STOML2	chr9	35094778	35108131
STOML2_chr9_35094778_35108131	0/0	c0003	1071	4	0	0	4	0	0	copy fasta	STOML2	chr9	35094778	35108131
STOML2_chr9_35094778_35108131	0/0	c0004	1071	2	2	0	0	0	0	copy fasta	STOML2	chr9	35094778	35108131
STOML2_chr9_35094778_35108131	0/0	c0005	1071	1	0	0	1	0	0	copy fasta	STOML2	chr9	35094778	35108131
STOML3_chr13_38960925_38995831	1/1	c0001	876	379	79	80	158	12	48	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	c0002	876	15	13	2	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	c0003	876	1	1	0	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOML3_chr13_38960925_38995831	0/0	c0004	876	1	1	0	0	0	0	copy fasta	STOML3	chr13	38960925	38995831
STOM_chr9_121333987_121375250	1/1	c0001	867	377	89	72	164	18	32	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	c0002	867	4	0	2	0	0	2	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	c0003	867	3	0	0	3	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	c0004	867	1	0	0	1	0	0	copy fasta	STOM	chr9	121333987	121375250
STOM_chr9_121333987_121375250	0/0	c0005	867	1	1	0	0	0	0	copy fasta	STOM	chr9	121333987	121375250
STON1_chr2_48525154_48603513	0/0	c0001	2208	129	16	30	57	6	20	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/1	c0002	2208	113	20	25	52	2	13	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	1/0	c0003	2208	69	37	5	24	0	2	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0004	2208	18	4	6	0	4	4	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0005	2208	12	3	2	6	1	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0006	2208	5	5	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0007	2208	3	2	1	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0008	2208	3	0	2	0	1	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0009	2208	2	0	0	2	0	0	copy fasta	STON1	chr2	48525154	48603513