JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STON1_chr2_48525154_48603513	0/0	c0010	2208	2	0	1	0	0	1	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0011	2208	2	2	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0012	2208	2	0	2	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0013	2208	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0014	2208	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0015	2208	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0016	2208	1	0	0	0	0	1	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0017	2208	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0018	2208	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0019	2208	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0020	2208	1	0	1	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0021	2208	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0022	2208	1	0	1	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0023	2208	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0024	2208	1	1	0	0	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0025	2208	1	0	0	0	0	1	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0026	2208	1	0	0	1	0	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0027	2208	1	0	0	0	1	0	copy fasta	STON1	chr2	48525154	48603513
STON1_chr2_48525154_48603513	0/0	c0028	2208	1	0	0	0	1	0	copy fasta	STON1	chr2	48525154	48603513
STON2_chr14_81255652_81405324	0/1	c0001	2868	73	11	19	30	2	10	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0002	2868	69	33	13	17	2	4	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	1/0	c0003	2868	62	4	13	35	2	7	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0004	2868	13	2	3	6	0	2	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0005	2868	11	6	2	2	0	1	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0006	2868	7	5	2	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0007	2868	7	7	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0008	2868	5	0	1	1	0	3	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0009	2868	4	4	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0010	2868	3	2	1	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0011	2868	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0012	2868	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0013	2868	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0014	2868	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0015	2868	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0016	2868	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0017	2868	1	0	0	1	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0018	2868	1	0	0	0	0	1	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0019	2868	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STON2_chr14_81255652_81405324	0/0	c0020	2868	1	1	0	0	0	0	copy fasta	STON2	chr14	81255652	81405324
STOX1_chr10_68822531_68898060	0/1	c0001	2664	161	26	25	84	7	18	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0002	2664	47	31	8	2	1	5	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0003	2664	26	1	6	14	1	4	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0004	2664	24	1	7	14	0	2	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0005	2664	11	0	3	0	1	7	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0006	2664	10	9	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0007	2664	5	5	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0008	2664	4	3	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0009	2664	3	0	0	0	0	3	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0010	2664	3	0	0	3	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0011	2664	3	3	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060