JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STOX1_chr10_68822531_68898060	0/0	c0012	2664	3	2	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0013	2664	3	3	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0014	2664	2	0	0	2	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0015	2970	1	0	0	1	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	1/0	c0016	2970	1	0	0	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0017	2664	1	0	0	1	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0018	2664	1	0	0	1	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0019	2664	1	0	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0020	2664	1	0	0	0	0	1	copy fasta	STOX1	chr10	68822531	68898060
STOX1_chr10_68822531_68898060	0/0	c0021	2664	1	0	1	0	0	0	copy fasta	STOX1	chr10	68822531	68898060
STOX2_chr4_183900307_184028526	0/1	c0001	2781	150	38	21	72	8	10	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	1/0	c0002	2781	127	27	27	40	6	26	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0003	2781	11	9	2	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0004	2781	9	7	2	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0005	2781	7	6	1	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0006	2781	4	1	3	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0007	2781	3	0	2	0	0	1	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0008	2781	2	0	0	0	0	2	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0009	2781	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0010	2781	1	0	0	0	0	1	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0011	2781	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0012	2781	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STOX2_chr4_183900307_184028526	0/0	c0013	2781	1	1	0	0	0	0	copy fasta	STOX2	chr4	183900307	184028526
STPG1_chr1_24351999_24418782	0/1	c0001	1005	105	5	16	61	8	14	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	1/0	c0002	1005	83	18	10	38	4	12	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0003	1005	81	10	19	42	2	8	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0004	1005	20	7	9	0	1	3	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0005	1005	16	12	3	0	0	1	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0006	1005	12	11	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0007	1005	9	9	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0008	1005	7	7	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0009	1005	7	7	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0010	1005	4	0	1	1	0	2	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0011	1005	4	1	2	0	0	1	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0012	1005	3	3	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0013	1005	2	1	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0014	1005	1	0	0	0	1	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0015	1005	1	0	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0016	1005	1	0	1	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0017	1005	1	1	0	0	0	0	copy fasta	STPG1	chr1	24351999	24418782
STPG1_chr1_24351999_24418782	0/0	c0018	1005	1	0	0	0	0	1	copy fasta	STPG1	chr1	24351999	24418782
STPG2_chr4_97553872_98148476	0/0	c0001	1380	76	19	23	19	4	11	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	1/0	c0002	1380	71	13	12	44	0	1	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/1	c0003	1380	65	15	7	30	2	10	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0004	1380	20	12	5	0	2	1	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0005	1380	19	10	4	4	0	1	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0006	1380	4	0	0	4	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0007	1380	2	2	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0008	1380	2	2	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0009	1380	1	1	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476