JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STPG2_chr4_97553872_98148476	0/0	c0010	1380	1	1	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0011	1380	1	0	0	1	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0012	1380	1	1	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0013	1380	1	1	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0014	1380	1	1	0	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG2_chr4_97553872_98148476	0/0	c0015	1380	1	0	1	0	0	0	copy fasta	STPG2	chr4	97553872	98148476
STPG3_chr9_137246286_137258483	0/1	c0001	927	233	46	51	92	12	31	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0002	927	81	1	15	53	3	9	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	1/0	c0003	927	75	38	9	23	1	3	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0004	927	4	4	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0005	927	2	1	1	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0006	927	1	0	0	1	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0007	927	1	1	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0008	927	1	0	0	1	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0009	927	1	1	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0010	927	1	1	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0011	927	1	0	0	0	0	1	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0012	927	1	1	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0013	927	1	1	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG3_chr9_137246286_137258483	0/0	c0014	927	1	1	0	0	0	0	copy fasta	STPG3	chr9	137246286	137258483
STPG4_chr2_47081991_47160308	1/1	c0001	747	233	53	35	109	10	24	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0002	747	51	20	13	7	2	9	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0003	747	45	10	6	23	1	5	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0004	748	8	0	4	4	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0005	748	2	0	1	1	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0006	747	2	0	2	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0007	747	2	2	0	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0008	747	2	1	1	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0009	748	1	1	0	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0010	747	1	0	0	0	0	1	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0011	747	1	1	0	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0012	747	1	1	0	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0013	747	1	0	0	0	1	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0014	747	1	1	0	0	0	0	copy fasta	STPG4	chr2	47081991	47160308
STPG4_chr2_47081991_47160308	0/0	c0015	747	1	0	0	0	0	1	copy fasta	STPG4	chr2	47081991	47160308
STRA6_chr15_74174466_74207787	1/1	c0001	2004	225	65	36	97	9	16	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0002	2004	89	6	11	59	4	9	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0003	2004	11	2	4	0	3	2	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0004	2004	6	6	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0005	2004	5	5	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0006	2004	4	4	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0007	2004	2	0	0	1	0	1	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0008	2004	2	2	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0009	2004	2	0	2	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0010	2004	2	0	2	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0011	2004	2	0	0	2	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0012	2004	2	1	1	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0013	2004	1	0	0	1	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0014	2004	1	0	1	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0015	2004	1	0	1	0	0	0	copy fasta	STRA6	chr15	74174466	74207787