JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STRA6_chr15_74174466_74207787	0/0	c0016	2004	1	0	0	1	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0017	2004	1	1	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0018	2004	1	0	0	1	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0019	2004	1	1	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA6_chr15_74174466_74207787	0/0	c0020	2004	1	1	0	0	0	0	copy fasta	STRA6	chr15	74174466	74207787
STRA8_chr7_135228838_135263663	0/0	c0001	1143	172	30	38	84	9	11	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/1	c0002	1143	113	27	28	24	5	28	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	1/0	c0003	1140	86	19	12	49	0	5	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0004	1140	17	0	0	17	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0005	1143	13	13	0	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0006	1143	6	0	0	6	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0007	1140	2	0	0	2	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0008	1140	2	0	0	2	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0009	1143	1	0	0	1	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0010	1143	1	0	0	1	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0011	1143	1	1	0	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0012	1143	1	1	0	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRA8_chr7_135228838_135263663	0/0	c0013	1143	1	1	0	0	0	0	copy fasta	STRA8	chr7	135228838	135263663
STRADA_chr17_63697832_63746799	1/1	c0001	1296	315	83	56	133	13	28	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	c0002	1296	3	0	0	3	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	c0003	1296	2	0	0	0	0	2	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	c0004	1296	2	2	0	0	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	c0005	1296	1	1	0	0	0	0	copy fasta	STRADA	chr17	63697832	63746799
STRADA_chr17_63697832_63746799	0/0	c0006	1296	1	0	0	0	1	0	copy fasta	STRADA	chr17	63697832	63746799
STRADB_chr2_201446740_201485846	0/1	c0001	1257	158	20	27	77	9	24	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	1/0	c0002	1257	115	27	31	50	4	2	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	c0003	1257	112	39	6	58	1	8	copy fasta	STRADB	chr2	201446740	201485846
STRADB_chr2_201446740_201485846	0/0	c0004	1257	1	0	0	1	0	0	copy fasta	STRADB	chr2	201446740	201485846
STRAP_chr12_15877387_15908478	1/1	c0001	1053	353	90	60	165	8	28	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	0/0	c0002	1053	1	0	0	1	0	0	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	0/0	c0003	1053	1	0	0	1	0	0	copy fasta	STRAP	chr12	15877387	15908478
STRAP_chr12_15877387_15908478	0/0	c0004	1053	1	0	0	1	0	0	copy fasta	STRAP	chr12	15877387	15908478
STRBP_chr9_123116617_123273586	1/0	c0001	2019	170	65	24	72	3	5	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/1	c0002	2019	63	4	22	28	1	7	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	c0003	2019	2	1	1	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRBP_chr9_123116617_123273586	0/0	c0004	2019	1	0	1	0	0	0	copy fasta	STRBP	chr9	123116617	123273586
STRC_chr15_43594563_43623800	1/1	c0001	5328	150	6	40	71	8	23	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0002	5328	100	35	12	44	1	8	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0003	5317	17	0	1	16	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0004	5328	14	5	2	0	4	3	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0005	5328	9	1	0	8	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0006	5328	9	3	1	5	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0007	5328	6	5	1	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0008	5328	6	6	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0009	5328	5	5	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0010	5328	5	3	0	1	0	1	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0011	5328	5	1	1	0	3	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0012	5328	5	0	4	0	0	1	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0013	5331	3	0	2	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0014	5328	3	2	1	0	0	0	copy fasta	STRC	chr15	43594563	43623800