JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
STRC_chr15_43594563_43623800	0/0	c0015	5328	3	2	0	0	0	1	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0016	5328	3	0	0	3	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0017	5328	2	0	1	0	0	1	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0018	5328	2	2	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0019	5328	2	0	0	2	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0020	5328	2	0	0	1	0	1	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0021	5331	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0022	5331	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0023	5328	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0024	5328	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0025	5328	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0026	5328	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0027	5328	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0028	5328	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0029	5328	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0030	5328	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0031	5328	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0032	5328	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0033	5328	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0034	5328	1	1	0	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0035	5328	1	0	0	0	0	1	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0036	5328	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0037	5328	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0038	5328	1	0	1	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0039	5328	1	0	1	0	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0040	5328	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0041	5328	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0042	5328	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRC_chr15_43594563_43623800	0/0	c0043	5316	1	0	0	1	0	0	copy fasta	STRC	chr15	43594563	43623800
STRIP1_chr1_110029624_110059641	1/1	c0001	2514	387	82	69	178	16	40	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	c0002	2514	9	9	0	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	c0003	2514	3	1	2	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	c0004	2514	2	0	0	2	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	c0005	2514	1	1	0	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	c0006	2514	1	0	1	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	c0007	2514	1	1	0	0	0	0	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	c0008	2514	1	0	0	0	0	1	copy fasta	STRIP1	chr1	110029624	110059641
STRIP1_chr1_110029624_110059641	0/0	c0009	2514	1	0	0	0	0	1	copy fasta	STRIP1	chr1	110029624	110059641
STRIP2_chr7_129429432_129493399	1/1	c0001	2505	296	88	58	100	10	38	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0002	2505	36	1	3	32	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0003	2505	2	2	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0004	2505	2	0	1	0	1	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0005	2505	2	0	2	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0006	2505	1	0	0	1	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0007	2505	1	0	1	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0008	2505	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0009	2505	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0010	2505	1	0	0	1	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0011	2505	1	0	1	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399
STRIP2_chr7_129429432_129493399	0/0	c0012	2505	1	1	0	0	0	0	copy fasta	STRIP2	chr7	129429432	129493399